Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22780 480 / 8e-172 PMDH1 peroxisomal NAD-malate dehydrogenase 1 (.1) AT5G09660 480 / 9e-172 PMDH2 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) AT3G15020 352 / 7e-122 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT1G53240 350 / 6e-121 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT3G47520 344 / 2e-117 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) AT4G17260 62 / 8e-11 Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012459 [exp] 592 / 0 AT2G22780 578 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10039642 [exp] 473 / 1e-168 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10011587 [exp] 405 / 6e-140 AT2G22780 547 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10017939 [exp] 363 / 1e-125 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10038323 [exp] 353 / 6e-122 AT3G15020 578 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Lus10034458 [exp] 338 / 3e-115 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10019096 [exp] 338 / 5e-115 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10021666 [exp] 335 / 6e-114 AT3G47520 542 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10000275 [exp] 333 / 5e-113 AT3G47520 543 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081600 [exp] 513 / 0 AT2G22780 602 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.001G287400 [exp] 508 / 0 AT2G22780 588 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.007G009100 [exp] 465 / 1e-165 AT2G22780 612 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.001G376500 [exp] 357 / 1e-123 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.011G096300 [exp] 357 / 2e-123 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.004G054200 [exp] 350 / 8e-121 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.004G112800 [exp] 350 / 7e-120 AT3G47520 583 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G102000 [exp] 349 / 3e-119 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G101900 [exp] 346 / 5e-118 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G152000 [exp] 239 / 4e-78 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10020501 pacid=23139536 polypeptide=Lus10020501 locus=Lus10020501.g ID=Lus10020501.BGIv1.0 annot-version=v1.0 ATGCAGCGTATTGCCAGAATTTCAGCTCATCTCAACCCTCCACGCTTCCAGGAAAATGGTAAAGGGGAAGAAGGAGAGTTAAGGAGGGAAGCTTGCAGGG CAAAAGGTGGGGCGCCTGGTTTCAAAGTTGCAATCTTGGGAGCAGCTGGAGGCATTGGACAATCACTCTCACTGCTAATGAAGATGAACCCTTTGGTCTC TGTTCTTCATCTGTACGACGTCGTCAACACCCCTGGTGTCACCGCCGATGTCAGCCACATGGACACCACCGCTGTGGTAAGAGGGTTCATGGGGCAACCG CAGCTAGAAGCAGCTCTGACAGGAATGGACCTGGTGATAATCCCGGCTGGTGTACCCAGGAAGCCTGGAATGACAAGGGATGATCTGTTCAAGATCAATG CTGGAATCGTGAAGACACTCTGTGAAGGAATATCCAAGTGCTGCCCTGATGCTGTGGTGAATCTCATCAGCAACCCTGTTAACTCCACTGTCGCCATTGC AGCTGAGGTCTTCAAGAAAGCTGGCACTTATAACCCTAAGCGCCTTCTCGGTGTCACCACCCTTGATGTGGCTCGTGCCAACACTTTTGTGGGAGAGGTT CTGGGGGTCGATCCCAAGATCGTTGATGTTCCGGTTGTTGGAGGCCATGCTGGAGTTACCATCTTGCCACTTCTCTCACAGGTGAAGCCTCCAGCTAACT TCACCCCAGAAGAAACTGAATACCTCACCAAGCGAATCCAAGATGGTGGCACCGAGGTCGTTCAGGCAAAGGCTGGGGCAGGATCTGCAACACTGTCCAT GGCGTACGCTGCTGCTAAGTTTGCAGACGCCTGCCTCCGAGGATTGAGAGGCGATGCAGGAGTTATCGAATGCTCATTTGTGGATTCCCAGGATTGGGCT GGAGAAGGCAAAGAAAGAGCTGGCAGAAAGCATCCAACACCAGTATAA
AA sequence Show only first row Show all	>Lus10020501 pacid=23139536 polypeptide=Lus10020501 locus=Lus10020501.g ID=Lus10020501.BGIv1.0 annot-version=v1.0 MQRIARISAHLNPPRFQENGKGEEGELRREACRAKGGAPGFKVAILGAAGGIGQSLSLLMKMNPLVSVLHLYDVVNTPGVTADVSHMDTTAVVRGFMGQP QLEAALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVKTLCEGISKCCPDAVVNLISNPVNSTVAIAAEVFKKAGTYNPKRLLGVTTLDVARANTFVGEV LGVDPKIVDVPVVGGHAGVTILPLLSQVKPPANFTPEETEYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAAKFADACLRGLRGDAGVIECSFVDSQDWA GEGKERAGRKHPTPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09660		PMDH2	peroxisomal NAD-malate dehydro...		Lus10020501 [exp]	0	1
AT3G14420			Aldolase-type TIM barrel famil...		Lus10005590 [exp]	3.3	0.9448
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10001645 [exp]	5.5	0.9405
AT3G14420			Aldolase-type TIM barrel famil...		Lus10013725 [exp]	7.1	0.9391
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10012459 [exp]	8.9	0.9363
AT3G05410			Photosystem II reaction center...		Lus10029903 [exp]	9.5	0.9299
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10028261 [exp]	11.3	0.9370
AT3G47070			unknown protein		Lus10001204 [exp]	12.4	0.9348
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10040228 [exp]	12.5	0.9350
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10027246 [exp]	14.1	0.9317
AT1G45230			Protein of unknown function (D...		Lus10006488 [exp]	16.2	0.9121

Compare expression of checked genes

Lus10020501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.