Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64510 546 / 0 TIN1 tunicamycin induced 1, unknown protein AT1G47310 78 / 2e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012458 [exp] 779 / 0 AT5G64510 543 / 0.0 tunicamycin induced 1, unknown protein Lus10011672 [exp] 118 / 2e-29 AT1G47310 312 / 7e-104 unknown protein Lus10032753 [exp] 112 / 3e-26 AT1G06870 379 / 3e-125 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081500 [exp] 578 / 0 AT5G64510 515 / 0.0 tunicamycin induced 1, unknown protein Potri.014G036300 [exp] 124 / 2e-31 AT1G47310 325 / 7e-109 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020502 pacid=23139596 polypeptide=Lus10020502 locus=Lus10020502.g ID=Lus10020502.BGIv1.0 annot-version=v1.0 ATGGCTACGAAGCTCTTGCCTGTTGTCGTTCTCTTCACCATTCTTTCTCTGTCATCTGCCGCTTCCTCCTCTCCCGAATTCCATCATCCTTCCTATCCCA AAGCCATCACCGACTTGAAGGATGCGGTGGTGAAGGGTCTAGGGTTACACGCAGATGACTTCAAGATATCGGGGTTTGATTTCAGAGACGCGCTTGTCGG GCATTCCGTAGAGTATGAATTCGACGTTGAGATCGATAAGCAGGTTGTTCCATTCAAGCTGTTGGAAGATGTGAATCGGTGGGAGTACGTCGATTTGCCT CTCTTTAGGATGGATGACGAGGTGCCATCGCCGTCAGGCCTTGACGGGAATGCCTTGGTCGAGACAAAGAGCGGGAATCCGTTGCCCGTATTGGCTCCCT TCCAGCTTGCTGGACCTATGGAGATATGGATTCAGGATGCCAAGCACATCCGCCTCTCTTTACCGCATGATGTGGATGCTGGAGTGTTGAAGAAAGTAAT GTTAGCAGATGGAGCTGTTGTAACAGTCAAGGGTGCAAGATCTGTTAGCTTACGCCACCCAATCGATCTTCCCTTACCTCTCAATAGGACTCAGAGCGGT TTCGCTGCTGGTCTTCTAGCTCTAGCAGAGCAGCTCCGCCACACATCCCGAGCTGAGGGTGCTCCCCTTCTGTCTCTGCGCATTGTTGGACCTACCTCCC TCGAGTCCCCAACCTCTACTGCACAATCCTCTAGTAACAAACTGAAGCTCAAGCGGCTGGCTCCAGGCCTCGTGGAGTTGTCCTCCCCAATGAAGAAGTC CAATGCCCTCTCCCCAGTTGACCTTGACGCTGCTACAACCACCGTCTTGACTCCCAAACACTTCAGCACAATGTGGCCACTTGCTTCCTTGAATGGATCC AACCCAAATCTTGTTGGCTTTGAGAGACTTCTGGCCTCTGTTCTGGGTCCTAAGGCAAATAAGAAGGGTTCCTTCAAGCTACTGAAGGCAGACGTATCGG CTCAGACATTTGTGAAACTCGGGTTTGGTGTGGAGAAGAAACTGAAAGAGGGAGATGGGATTGTTTTGGAAGGTTTTGCAGATTGGAGGACAAAGCCAGA GTCGGTGAGGATGCATTTCGAGGTGTTGGCTAAGGTAGACGGGAAGAAGGTTATTCCGGAGAGAGTTGTGCAGGTTAACCCGGTGATCACTGAAGATACC GTAGCACAGAGTGTATTAACAGGAAACGTAACAATGTCCTCCGTTCCAACTGTTTACACTCCTTCCAACCCCTTCACTCTGTGA
AA sequence Show only first row Show all	>Lus10020502 pacid=23139596 polypeptide=Lus10020502 locus=Lus10020502.g ID=Lus10020502.BGIv1.0 annot-version=v1.0 MATKLLPVVVLFTILSLSSAASSSPEFHHPSYPKAITDLKDAVVKGLGLHADDFKISGFDFRDALVGHSVEYEFDVEIDKQVVPFKLLEDVNRWEYVDLP LFRMDDEVPSPSGLDGNALVETKSGNPLPVLAPFQLAGPMEIWIQDAKHIRLSLPHDVDAGVLKKVMLADGAVVTVKGARSVSLRHPIDLPLPLNRTQSG FAAGLLALAEQLRHTSRAEGAPLLSLRIVGPTSLESPTSTAQSSSNKLKLKRLAPGLVELSSPMKKSNALSPVDLDAATTTVLTPKHFSTMWPLASLNGS NPNLVGFERLLASVLGPKANKKGSFKLLKADVSAQTFVKLGFGVEKKLKEGDGIVLEGFADWRTKPESVRMHFEVLAKVDGKKVIPERVVQVNPVITEDT VAQSVLTGNVTMSSVPTVYTPSNPFTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	0	1
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10004336 [exp]	2.4	0.9617
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Lus10026671 [exp]	3.9	0.9213
AT3G15040			Protein of unknown function, D...		Lus10029411 [exp]	4.4	0.9187
AT3G10020			unknown protein		Lus10003372 [exp]	5.1	0.9548
AT1G52690		LEA7	LATE EMBRYOGENESIS ABUNDANT 7,...		Lus10013489 [exp]	5.2	0.9105
					Lus10042011 [exp]	5.9	0.9392
AT4G23490			Protein of unknown function (D...		Lus10024662 [exp]	6.0	0.9187
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	6.5	0.9479
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040528 [exp]	6.6	0.9445
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027778 [exp]	8.5	0.9137

Compare expression of checked genes

Lus10020502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.