Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37850 187 / 4e-58 bHLH bHLH025 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22750 157 / 9e-47 bHLH bHLH018 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G22770 157 / 2e-46 bHLH NAI1, bHLH020 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22760 156 / 2e-46 bHLH bHLH019 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 85 / 1e-18 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT3G61950 84 / 1e-18 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G29930 78 / 3e-17 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G09820 80 / 6e-17 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12860 80 / 7e-17 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G32640 77 / 9e-16 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012457 [exp] 486 / 1e-176 AT4G37850 188 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10019247 [exp] 214 / 2e-68 AT4G37850 217 / 3e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011578 [exp] 210 / 3e-67 AT4G37850 209 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003488 [exp] 203 / 2e-63 AT4G37850 212 / 6e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039639 [exp] 179 / 1e-54 AT4G37850 191 / 3e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039640 [exp] 169 / 2e-50 AT4G37850 156 / 2e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042572 [exp] 80 / 3e-18 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030243 [exp] 81 / 3e-17 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10030970 [exp] 81 / 6e-17 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G287200 [exp] 277 / 3e-93 AT4G37850 215 / 7e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G081400 [exp] 269 / 7e-90 AT4G37850 209 / 3e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G095250 [exp] 191 / 2e-59 AT4G37850 213 / 5e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G009400 [exp] 182 / 1e-55 AT4G37850 130 / 1e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G099700 [exp] 85 / 1e-18 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G172101 [exp] 84 / 4e-18 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G208600 [exp] 82 / 1e-17 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 79 / 2e-16 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G176900 [exp] 78 / 3e-16 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.005G221100 [exp] 74 / 5e-15 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10020503 pacid=23139564 polypeptide=Lus10020503 locus=Lus10020503.g ID=Lus10020503.BGIv1.0 annot-version=v1.0 ATGGAGGATCACACTCACTTCATTAACCAGTGGCGGCAAATGGACAGCAGCAACAACAGCTCGTTTGGAGTTCCCACACTTGAAAATGGACTGTTTAACA CCACCATGCCTTCTCATCATCATGCTCTTGAGATGGGATTTCTGAAGCCTAAACAGGAAGCAGCAGAGATGTATCTTTCTCAGCAAAACTGGTTTGGGAA TCATCATAATGTCATCTCCAAGGGAAGAACCAGAATGTCTCAACAGAGTCGAGATCATGTCATAGCGGAAAGGAAGCGAAGGGAGAAGCTCAGTCAGAAA TTCATTGCTTTATCTGCCATCGTACCTGGCCTTAAAAAGATGGATAAGGCTTCTGTTCTTGGGGATGCAATAAAGTACTTGAAACAGCTACAAGAGAGAG TCAAAATCCTTGAGGAGCAAACAAGGAACAAATCTATGGAATCAGCTAAGGTGGTTGTGAAGAAATCCAGAGTCTTTGATGTGGGTTATGATGAATGTGG CTCAGGCGAGCAGCTACCGGAGATTGAAGCAAGATTCTGTGATAGACATGTTCTCATAAGGGTCCACTGTGAGAAAAAGAAAGGACTCTTGGAGAAGACG GTAGCTGAAATTGAGAAACTCCATCTGACTGTCATTAACACTAGTGTTCTGACATTTGGAAGCTCAGCCCTGGATCTCACAATCATTGCTCAGATGGATA TGGAATTCAACATGACAGTGAAAGAGGTTGTGCAAAAGCTACACCCAGCTTTCAATTTGTTCAAGTGA
AA sequence Show only first row Show all	>Lus10020503 pacid=23139564 polypeptide=Lus10020503 locus=Lus10020503.g ID=Lus10020503.BGIv1.0 annot-version=v1.0 MEDHTHFINQWRQMDSSNNSSFGVPTLENGLFNTTMPSHHHALEMGFLKPKQEAAEMYLSQQNWFGNHHNVISKGRTRMSQQSRDHVIAERKRREKLSQK FIALSAIVPGLKKMDKASVLGDAIKYLKQLQERVKILEEQTRNKSMESAKVVVKKSRVFDVGYDECGSGEQLPEIEARFCDRHVLIRVHCEKKKGLLEKT VAEIEKLHLTVINTSVLTFGSSALDLTIIAQMDMEFNMTVKEVVQKLHPAFNLFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10020503 [exp]	0	1
AT3G02060			DEAD/DEAH box helicase, putati...		Lus10041506 [exp]	8.5	0.8244
AT1G60230			Radical SAM superfamily protei...		Lus10013005 [exp]	13.1	0.8658
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10007634 [exp]	14.4	0.8280
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Lus10034513 [exp]	18.3	0.8449
AT1G56500			haloacid dehalogenase-like hyd...		Lus10029840 [exp]	18.8	0.8540
AT1G56500			haloacid dehalogenase-like hyd...		Lus10020699 [exp]	23.7	0.8451
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	24.6	0.8498
AT5G08050			Protein of unknown function (D...		Lus10040515 [exp]	28.6	0.8371
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10016195 [exp]	29.8	0.8270
AT5G08650			Small GTP-binding protein (.1)		Lus10035968 [exp]	31.4	0.8297

Compare expression of checked genes

Lus10020503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.