Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33670 498 / 3e-177 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 90 / 9e-20 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 89 / 4e-19 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 87 / 7e-19 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT1G60730 86 / 9e-19 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G60710 84 / 1e-17 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 82 / 5e-17 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G10810 74 / 2e-14 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 71 / 3e-13 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37760 63 / 7e-11 AKR4C8 Aldo-keto reductase family 4 member C8, NAD(P)-linked oxidoreductase superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012456 [exp] 587 / 0 AT4G33670 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 98 / 2e-22 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 94 / 6e-21 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 87 / 2e-18 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041272 [exp] 87 / 2e-18 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023674 [exp] 86 / 4e-18 AT1G04690 619 / 0.0 potassium channel beta subunit 1 (.1) Lus10011751 [exp] 85 / 5e-18 AT1G04690 619 / 0.0 potassium channel beta subunit 1 (.1) Lus10041185 [exp] 85 / 6e-18 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 78 / 2e-15 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081300 [exp] 538 / 0 AT4G33670 529 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G287100 [exp] 528 / 0 AT4G33670 518 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 96 / 1e-21 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 94 / 7e-21 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.014G147700 [exp] 90 / 2e-19 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 89 / 2e-19 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 89 / 3e-19 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 86 / 3e-18 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G052100 [exp] 83 / 2e-17 AT1G04690 602 / 0.0 potassium channel beta subunit 1 (.1) Potri.005G052400 [exp] 83 / 3e-17 AT1G60680 395 / 1e-137 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10020504 pacid=23139612 polypeptide=Lus10020504 locus=Lus10020504.g ID=Lus10020504.BGIv1.0 annot-version=v1.0 ATGAAAGGCCCAAATGAGACCCAACAGTTCAAAGTGGACGGCCCAAACGAAGCCCGACCGTCCAAAGTGGACCGTGATAGGTTCGAGCCGTGGACAGCTG GGGCTCGTTTGGACCATCCACTTTGGACTGTTGGGACTCGTTCGAACCTTCCAATTTGGACGGCTGGGGTAGTGTCGGGAGCGGCCGACATTGGTAACCG GGGAAGGAAGTGGTGCTCGACGGCGGCGGATTCCTGCCGGAGGCGGCTGACGCTAGTGAATTCTGGCGGCGGTGGTGGCGGAGGCCGGCGGTGGTGGTCC GTGATTGTAAGGAGTCGTGTGTCGGTGATTGTAACTCGACCAAGGATATTCGCATCCATTGAAGTGGCAGCATCTATGCACCCGAAAATGGAGTACCGAC CACTGGGGAACACCGGCCTCAAGCTCAGTTGCGTCGGCTTCGGAGCTTCTCCTCTCGGCAATACCTTCGGCCCTGTTTCCGAGCACGACGCCTTCGCCTC CGTCCACGACGCCGTCCGCCTCGGCATTAATTTCTTCGACACCTCTCCCTATTATGGAGCTACATTGTCGGAAAAGGTGCTTGGTAAGGCACTCAAAGCA CTAGGAGCTCCCAGAAATGAGTATATTGTGTCAACCAAATGCGGTAGGTATAGCGAGGGTTTTGATTTCAGTGCCGAGAGGGTGACTAGGAGCATCGACG AGAGCTTAGCAAGGTTGCAGCTGGATTATGTTGATATACTGCATTGCCACGACATTGAGTTTGGCTCTCTGGATCAGATTGTGACCGAGACGATTCCTGC TCTTCTGAAACTAAAGGAAGCTGGGAAGATCAGATTCATTGGGATAACTGGACTTCCACTGGGGATATTTACATATGTGCTTGATCGAGTGCCTCCAGGC ACAGTTGATGTGATCTTGTCATATTGTCACTACAGTATTAACGATTCAACGTTGGCGGATTTAATTCCCTATTTGAAGAGCAAAGGTGTAGGGATTATCA GTGCTTCTCCACTCTCTATGGGACTACTTACAGAAACTGGCCCTCCAGAATGGCACCCCGCTTCTCCTGAACTGAAGGCGGCCTGTAAAGCTGCTGCCTT GCAGTGTAAACAGAAAGGAAAGGATCTTCCGAAGCTAGCAATGCAGTACAGCTTAAGAAACAAGGATATTTCAACAACATTGGTTGGGATGAACTCTGTT AAACAGGTAGAGGAAAATGTTGCGGCAGCGACGGAATACGATACATTGGGACAAGATATGGAAACGTTAGCAGAAGTAGAAACCATTCTGGGTCCTGTGA AGAACCAGACGTGGCAAAGTGGAATCCAGCAGTAG
AA sequence Show only first row Show all	>Lus10020504 pacid=23139612 polypeptide=Lus10020504 locus=Lus10020504.g ID=Lus10020504.BGIv1.0 annot-version=v1.0 MKGPNETQQFKVDGPNEARPSKVDRDRFEPWTAGARLDHPLWTVGTRSNLPIWTAGVVSGAADIGNRGRKWCSTAADSCRRRLTLVNSGGGGGGGRRWWS VIVRSRVSVIVTRPRIFASIEVAASMHPKMEYRPLGNTGLKLSCVGFGASPLGNTFGPVSEHDAFASVHDAVRLGINFFDTSPYYGATLSEKVLGKALKA LGAPRNEYIVSTKCGRYSEGFDFSAERVTRSIDESLARLQLDYVDILHCHDIEFGSLDQIVTETIPALLKLKEAGKIRFIGITGLPLGIFTYVLDRVPPG TVDVILSYCHYSINDSTLADLIPYLKSKGVGIISASPLSMGLLTETGPPEWHPASPELKAACKAAALQCKQKGKDLPKLAMQYSLRNKDISTTLVGMNSV KQVEENVAAATEYDTLGQDMETLAEVETILGPVKNQTWQSGIQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33670			NAD(P)-linked oxidoreductase s...		Lus10020504 [exp]	0	1
AT1G78560			Sodium Bile acid symporter fam...		Lus10013700 [exp]	4.7	0.8844
AT4G19010			AMP-dependent synthetase and l...		Lus10016630 [exp]	5.0	0.8689
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10001765 [exp]	10.2	0.8819
AT5G10160			Thioesterase superfamily prote...		Lus10020419 [exp]	10.4	0.8397
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10027304 [exp]	11.2	0.8659
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031909 [exp]	12.2	0.8699
AT1G11800			endonuclease/exonuclease/phosp...		Lus10020021 [exp]	15.4	0.8818
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031337 [exp]	20.8	0.8578
AT1G12460			Leucine-rich repeat protein ki...		Lus10006675 [exp]	21.9	0.8413
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10005430 [exp]	24.0	0.8356

Compare expression of checked genes

Lus10020504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.