Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14255 376 / 2e-126 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G20350 342 / 4e-112 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G03430 71 / 7e-14 Ankyrin repeat family protein (.1) AT5G60070 71 / 4e-13 ankyrin repeat family protein (.1) AT5G66055 67 / 6e-12 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT3G04710 66 / 2e-11 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT5G40160 59 / 1e-09 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT2G26650 57 / 1e-08 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT3G02850 57 / 1e-08 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT4G19150 56 / 1e-08 Ankyrin repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012455 [exp] 563 / 0 AT2G14255 597 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10008037 [exp] 306 / 5e-98 AT5G20350 905 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10038108 [exp] 272 / 8e-86 AT5G20350 839 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10000132 [exp] 84 / 9e-20 AT2G14255 67 / 2e-14 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10003748 [exp] 77 / 4e-15 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10003260 [exp] 73 / 1e-13 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10006559 [exp] 73 / 1e-13 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10015687 [exp] 71 / 6e-13 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10037694 [exp] 71 / 9e-13 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G287000 [exp] 425 / 2e-145 AT2G14255 671 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.018G121200 [exp] 351 / 2e-115 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.006G061800 [exp] 347 / 4e-114 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.010G161300 [exp] 74 / 1e-14 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.013G042300 [exp] 72 / 2e-13 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.003G103400 [exp] 69 / 6e-13 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.005G054800 [exp] 70 / 1e-12 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.005G105800 [exp] 69 / 2e-12 AT5G66055 457 / 3e-159 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.010G185200 [exp] 68 / 4e-12 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.017G135400 [exp] 68 / 5e-12 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10020505 pacid=23139607 polypeptide=Lus10020505 locus=Lus10020505.g ID=Lus10020505.BGIv1.0 annot-version=v1.0 ATGGCCTCTTCAGAAATCGAAGTCGTGTCGCCGGCGGCGGAATCGGTCGTCCAGCAGCAGCAGCAAAACGGAATACAGCATGATCAATCCCCAAGCGCTG CAGATGCAGCTAACGCCACGAATGTTTATTCCGCTTCTGCTTACGGAGATCTCGAGAAATTACGCTACTATGTTGAGCAGGAGGGGGCATCCCTCTCCGT ACCCGACGGCCATGGCTACTATGCTCTTCAGTGGGCTGCTCTTGGGAACTTCACTCATTTAGCTCAATTCATTATCGAGCATGGTGGCGATGTTAATGCT ACTGACAACTCGGAGCAGACAGCTTTGCACTGGGCAGCAGTTAGGGGCTTGACTTCTGTGGCGGATGCTGTGGCGCATTTTCTTATTCAAAGTGGAGCTC GGGGTGAGGCGGCTGATTTTAATGGCTACCGCGCAGTTCATGTTGCTGCTCAATATGGACAAACTGCTTTTTTGAATCACATTGTGGTGAACCATCATGC TGATTTCGATGCACCTGACAAAGATGGGAGGAGCCCTCTTCATTGGGCTGCTTACAAGGGCAACGTTGACACAATTAGATTACTTCTATTTCGAGAAGCA AGCCAAGGGAAACAAGATAGAGAAGGTTGTACCCCTTTACATTGGGCTGCATTAGCAGGGCATGTAGAGGCATGCTCTGTACTAGTGCATGCTGGCACCA AGAAAGAGCTATCAGTGAAAGATAAGGCTGGTTTCACTCCTGCTCAGCTTGCATCTGATAAAGGTCATCGACAAGTTGCCCGTTTGCTTTCTAGTGCACA GTTGCTACAGAGCAATACTCTGGGAAACAAATTGTGTGGTCGGAAGCTGAGTAACATTGGATTTGCTCCCATTTTGGTGTCTTCGATCCTTGTTGGTGTT TTTCTTTTTCTTAATTCCATTATTGCAGCTCCAAGTTTCCCGAAGATAACAGCTGTTATTGGCTTTTGGGCAATGGTTTGCGTCTCTCTGGCTATTCTGG CACTGATCATGTTGTACCGCTGTAGTAGTACAGATCCTGGCTATATCAAAAGACTGGAGGATTTAGATAAACATGCTAATACAAAGATAAGTCGAAACAT CACGACCAATGAACTTGCAAATGCCAGACGTTATGGATACATGCAAGGACCAGACGGGAAGTTCCGGAACCCTTACAATCACGGGTGCAGAAAGAACTGT GTCGATTTCTTCAACAATGGATACATGGATGACAACCCGATTGCGTGGCCACCATTGGAGCAGATTGTGAACCACTAA
AA sequence Show only first row Show all	>Lus10020505 pacid=23139607 polypeptide=Lus10020505 locus=Lus10020505.g ID=Lus10020505.BGIv1.0 annot-version=v1.0 MASSEIEVVSPAAESVVQQQQQNGIQHDQSPSAADAANATNVYSASAYGDLEKLRYYVEQEGASLSVPDGHGYYALQWAALGNFTHLAQFIIEHGGDVNA TDNSEQTALHWAAVRGLTSVADAVAHFLIQSGARGEAADFNGYRAVHVAAQYGQTAFLNHIVVNHHADFDAPDKDGRSPLHWAAYKGNVDTIRLLLFREA SQGKQDREGCTPLHWAALAGHVEACSVLVHAGTKKELSVKDKAGFTPAQLASDKGHRQVARLLSSAQLLQSNTLGNKLCGRKLSNIGFAPILVSSILVGV FLFLNSIIAAPSFPKITAVIGFWAMVCVSLAILALIMLYRCSSTDPGYIKRLEDLDKHANTKISRNITTNELANARRYGYMQGPDGKFRNPYNHGCRKNC VDFFNNGYMDDNPIAWPPLEQIVNH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14255			Ankyrin repeat family protein ...		Lus10020505 [exp]	0	1
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10021888 [exp]	5.7	0.8610
AT5G58720			smr (Small MutS Related) domai...		Lus10040668 [exp]	6.0	0.8497
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	9.8	0.8554
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	10.2	0.8558
AT5G26760			unknown protein		Lus10005906 [exp]	16.6	0.8391
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10032614 [exp]	17.7	0.8205
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	18.0	0.8315
AT1G27520			Glycosyl hydrolase family 47 p...		Lus10042143 [exp]	23.0	0.8130
AT3G12590			unknown protein		Lus10001698 [exp]	23.5	0.8138
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10017272 [exp]	25.0	0.8220

Compare expression of checked genes

Lus10020505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.