Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43190 1372 / 0 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G20830 1332 / 0 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT4G02280 1124 / 0 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G49190 1116 / 0 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT1G73370 900 / 0 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G37180 859 / 0 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT4G10120 157 / 3e-39 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT5G11110 146 / 8e-36 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT1G04920 142 / 1e-34 ATSPS3F sucrose phosphate synthase 3F (.1) AT5G20280 134 / 4e-32 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012454 [exp] 1562 / 0 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10001468 [exp] 1085 / 0 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10010308 [exp] 1027 / 0 AT5G49190 1318 / 0.0 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) Lus10020791 [exp] 874 / 0 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10007372 [exp] 867 / 0 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10041979 [exp] 843 / 0 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10017984 [exp] 798 / 0 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10013417 [exp] 583 / 0 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10008205 [exp] 367 / 2e-120 AT4G02280 466 / 2e-159 sucrose synthase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G063500 [exp] 1402 / 0 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.006G136700 [exp] 1397 / 0 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.002G202300 [exp] 1125 / 0 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.012G037200 [exp] 926 / 0 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.015G029100 [exp] 926 / 0 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.017G139100 [exp] 911 / 0 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.004G081300 [exp] 899 / 0 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.013G095500 [exp] 154 / 3e-38 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.017G057800 [exp] 148 / 2e-36 AT1G04920 1610 / 0.0 sucrose phosphate synthase 3F (.1) Potri.018G025100 [exp] 147 / 4e-36 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF00862 [flax] [poplar] Sucrose_synth Sucrose synthase
Representative CDS sequence Show only first row Show all	>Lus10020506 pacid=23139539 polypeptide=Lus10020506 locus=Lus10020506.g ID=Lus10020506.BGIv1.0 annot-version=v1.0 ATGGCTGATCGCGTCATCACGCGTGTTCACAGTATCAAGGAGCGCCTTGATGGGACTCTGGCTGCCAACCGCAACGAGCTCGTCTCCTTCCTCTCCAGGA TTGAGGCGAAGGGAAAGGGAATTCTGCAGCACCATCACATCGTTTCGGAGTTTGAAGCGATCCCTGAGGCGAACCAGACGGTTCTCCAGGAAGGTGTGTT TGGCGAGGTGCTGAGATCTGCTCAGGAAGCGATCGTGCTTCCCCCCTGGGTTGCTCTAGCTGTTAGACCAAGGCCTGGTGTCTGGGAGTACTTTAGGGTC AATCTCCATGCTCTGGTTGTCGAGGAGCTCACTGTGCCTGAGTATCTTCACTTCAAGGAAGAGCTCGTCGATGGAACTGCTAATGGAAACTTCGTGCTGG AACTGGACTTCGAGCCGTTCAACGCTTCATTCCCACGCTCCAGCCTCTCCAAATCCATCGGCAATGGCGTTGAGTTTCTCAACCGTCACTTGTCTGCTAA GCTTTTCCATGACAAGGAGAGCATGCACCCGCTCCTTGAGTTCCTCAAGGTTCACTGCCACAAAGGAAAGAACATGATGCTGAACGACAGGATTCAGAAC TTCAACTCTCTGCAACATGTGCTGAGGAAGGCTGAAGAGTACCTCATAACTCTACCTGCGGAGACGCCTTACTCCCAGTTCGAGCACAAATTCCAGGATA TTGGGCTTGAGAGAGGGTGGGGTGACTGTGCTGAGCGTGTTCTCGAGATGATCCAGCTCCTGCTGGACCTTCTCGAGGCTCCTGATCCTTGCACCCTCGA GACTTTCCTCGGCAGAATCCCGATGGCGCTCAATGTTGTCATCATGTCTCCTCATGGCTACTTCGCCCAGGACAACGTGTTGGGTTACCCGGACACTGGT GGCCAGGTTGTGTACATCTTGGACCAGGTTCGCGCTTTGGAGGAGGAAATGCTCCTCCGTATCAAGCAGCAAGGCCTTGACATCACCCCTCGTATTCTTA TTATTACTCGTCTCCTTCCCGATGCAGTTGGAACCACTTGTGGGCAACGCATGGAGAGAGTGTATGGAACTGAATACTCTGATATTCTTCGAATCCCCTT CCGGACTGAGAAGGGGATTGTTCGCAAATGGATCTCTAGATTTGAAGTCTGGCCATACCTAGAGACCTTTACTGAGGATGTTGCTGTTGAAATTGGCAAG GAGTTTCAAGGCAAACCCGATCTCATCATTGGAAACTACAGCGATGGAAACATCGTAGCTACATTGCTGTCACATAAATTGGGCGTCACAGAGTGTACAA TTGCTCATGCTCTTGAGAAAACCAAGTATCCAGAGTCTGATATCTACTGGAAGAAGATGGATGAGAAGTACCACTTCTCTTGTCAGTTCACTGCTGATCT CATTGCCATGAATCATGCTGATTTCATCATCACCAGTACCTTCCAAGAGATTGCTGGAAGCAAGGATACAGTGGGACAATACGAGAGCCACACCTCTTTC ACTCTTCCTGGACTCTACCGTGTTGTTCACGGTATCAATGTCTTCGACCCGAAGTTCAACATTGTTTCCCCAGGTGCGGACATGAGCATCTACTTCTCTT ACAACGAGGAGAAGCGTAGGCTCAAGCATTTCCATTCCGAAATCGAGGAGCTTCTCTACAGCGATGTTGAGAACAAAGAACACTTGGGGGTGCTCAAGGA TCGCAGCAAGCCAATTATCTTCACAATGGCAAGGCTGGACAGGGTAAAGAACTTGACCGGACTCGTAGAGTGGTACGGTAAGAACAAGAAGCTGAGGGAA TTGGTGAACCTTGTAATCGTGGGAGGAGACAGGAGGAAGGAGTCCAAAGATCTGGAAGAGCAAGCCGAAATGAAGAAGATGTACAGCCTGATCGAGGAGT ACAAGCTGCAAGGACAGTTCAGGTGGATATCCTCCCAGATGGACAGGGTTAGGAACGGCGAGCTCTACCGTTGCATTGCCGACACCAAGGGAGCATTCGT ACAGCCCGCTCTTTACGAGGCATTCGGTCTGACAGTTGTGGAAGCCATGACCTGTGGTTTGCCTACATTTGCCACCAACAACGGTGGGCCGGCTGAGATC ATCGTTCATGGCAAGTCAGGGTACCACATTGACCCGTACCATGGGGATCAGGCTGCTGAGCTTCTGGTGGACTTCTTCGAGAAGTCGAAGGCTGATCCGT CCCACTGGGACAAGATATCTGATGGAGGACTCCAACGTATTCAAGAGAAGTATACATGGCAGATATACTCGCAGAGGCTGCTGACACTGACGGCAGTATA TGGATTCTGGAAGCATGTATCGAACTTGGATCGGCAGGAGAGCCGACGATATATCGAGATGTTCTACGCCCTCAAATACCGTAAACTGGCGGAAGGTGTT CCGCTGACGGAAGAGTAA
AA sequence Show only first row Show all	>Lus10020506 pacid=23139539 polypeptide=Lus10020506 locus=Lus10020506.g ID=Lus10020506.BGIv1.0 annot-version=v1.0 MADRVITRVHSIKERLDGTLAANRNELVSFLSRIEAKGKGILQHHHIVSEFEAIPEANQTVLQEGVFGEVLRSAQEAIVLPPWVALAVRPRPGVWEYFRV NLHALVVEELTVPEYLHFKEELVDGTANGNFVLELDFEPFNASFPRSSLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLKVHCHKGKNMMLNDRIQN FNSLQHVLRKAEEYLITLPAETPYSQFEHKFQDIGLERGWGDCAERVLEMIQLLLDLLEAPDPCTLETFLGRIPMALNVVIMSPHGYFAQDNVLGYPDTG GQVVYILDQVRALEEEMLLRIKQQGLDITPRILIITRLLPDAVGTTCGQRMERVYGTEYSDILRIPFRTEKGIVRKWISRFEVWPYLETFTEDVAVEIGK EFQGKPDLIIGNYSDGNIVATLLSHKLGVTECTIAHALEKTKYPESDIYWKKMDEKYHFSCQFTADLIAMNHADFIITSTFQEIAGSKDTVGQYESHTSF TLPGLYRVVHGINVFDPKFNIVSPGADMSIYFSYNEEKRRLKHFHSEIEELLYSDVENKEHLGVLKDRSKPIIFTMARLDRVKNLTGLVEWYGKNKKLRE LVNLVIVGGDRRKESKDLEEQAEMKKMYSLIEEYKLQGQFRWISSQMDRVRNGELYRCIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATNNGGPAEI IVHGKSGYHIDPYHGDQAAELLVDFFEKSKADPSHWDKISDGGLQRIQEKYTWQIYSQRLLTLTAVYGFWKHVSNLDRQESRRYIEMFYALKYRKLAEGV PLTEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10020506 [exp]	0	1
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10012454 [exp]	1.0	0.9783
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Lus10032998 [exp]	3.5	0.9319
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10013148 [exp]	4.5	0.8911
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	4.9	0.9260
AT4G39230			NmrA-like negative transcripti...		Lus10042313 [exp]	5.5	0.9384
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10009985 [exp]	6.0	0.9310
AT2G40120			Protein kinase superfamily pro...		Lus10028283 [exp]	6.9	0.9108
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10024850 [exp]	7.1	0.8552
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10033524 [exp]	7.5	0.9124
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10024068 [exp]	7.7	0.9266

Compare expression of checked genes

Lus10020506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.