Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37820 85 / 3e-17 unknown protein AT4G33740 81 / 5e-16 unknown protein AT2G22795 79 / 2e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012453 [exp] 664 / 0 AT4G33740 95 / 1e-20 unknown protein Lus10011571 [exp] 98 / 4e-21 AT4G37820 112 / 2e-25 unknown protein Lus10019253 [exp] 96 / 1e-20 AT4G37820 110 / 3e-25 unknown protein Lus10007239 [exp] 52 / 7e-08 AT2G22795 59 / 9e-11 unknown protein Lus10028240 [exp] 52 / 1e-07 AT2G22795 59 / 1e-10 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G288800 [exp] 105 / 8e-24 AT4G33740 93 / 7e-20 unknown protein Potri.007G008600 [exp] 95 / 3e-20 AT2G22795 103 / 2e-22 unknown protein Potri.009G083900 [exp] 90 / 5e-19 AT4G33740 94 / 2e-20 unknown protein Potri.002G112800 [exp] 77 / 3e-15 AT4G37820 83 / 1e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020507 pacid=23139530 polypeptide=Lus10020507 locus=Lus10020507.g ID=Lus10020507.BGIv1.0 annot-version=v1.0 ATGATTAAACGGTTTCCAAGTAGAAATTCTAGGTCGAAAGGAATCAAGGTAAAACATGTTCTGCAGATTTGCCTGTTGCTTGGTGTCTGTTTCTGGTTAA TCTACCAAGTCAAGCATTCCCATGACAAGAAGAAGGAGTTTGATGAGAAAGACGCCGAAGTTGCTTCCCGAGGACAAAGTGACCATGAGAAACCAAAGTT CGGGAGGAAAGACCTCCAACCTCGTGTGGATGATGTAGCCAAGAATGAGAAAGCAGGGGAGGATGAAGACGATGAAACTATGGCGGAGGAAGTCATCAAT GGGGGAGAAAATAAACACGCAGAAGGGGTAGGGCAAGAACATGAAGTTACTAAGCATGAGGATGAGGAGCGAGAAGACATTAGTAAGCAGGAAGATGAAG AAATGGACGAGGATGAGACTAAGCATGAGGAAGAGGTGCAAGAAGAGGAAAAGAAGGTTGACGAGAGTGAAGAAGATGGCAGAGGAGCTGGTGATGATGA GATAGATGAACATGATCATGATAAACTGGAAGCAGAAAATGTTGAGGAAGATGCTATAGATGAGGAGAAAGAGAAAGCAGAGGAAGATAACGAAAAGGAG GGTGAAGTTAATAAAGATGATGGCAAAGACGTTGAAGTTGACCATGAAGCATCACTCAAAGACGGAGATCATGACGATGGAAGTCAGAATACTCATGACC ATGAGGCTCGTGAGGAACATTATAGAGCAGACGATGCTTCTAGTGCTGTGACTCATGATGCTCTGACTATTGAATCCGGTAAAGAAATTTTGGATAGCAC CAATGGGACAACTGATGTACAGGAAGATGAGATTGCCAAGAATAGTGTTACTGCAAATCTGAACTCGACATCGCAGCTGGACAAAGGTGACATTGCTGCA AATAGATCTTTGGATGCGACAGTTGGTGAACTGAAGGATGAGAAGATCAGTCTTCCGAGCTCTGATAATACGACATTCACCATGGTATCAGATGATCATC AACAAAAAAGCGACGAATCTGCTGCAGTGAACCCAGAAACTGGCGAAAATAGTACGGACACTACTTCGCTAGCAAATTCGACATCTGTGCAAAATGCAAC AGCTGGAGAGTCGGCTACTAATGAAGTATCCAACCTACCAACAGACGACACCACCACCGAACCTCAAAGGGTCGATGATGAGTCTGATTCTGGCGACCTG CCAACCGATCCTCAAAGGGTCAACAATGAGTCTGTTTCTGGTAAGGATCAGTCTACTTCCACTCCAATCATCTCAGAAGCTGAAGACGGAAAGTCCTCAA ACTCAACTATCGACTCGGACTCTGGTATCCATAATCAGACTGTTGATGATGAAACAACGGGTGAAGAAGAAAAGGCGAAGCCTGACGAGAACCCTGAAAG TCAAATGGAGAACCCAGAAGAGAACCAAGGGGGAGGCAACGCGGAAGCTACACACGACCCAATTGATTCTTCTGATTCTTCAGTTGATCAGGAAGAGAAT GCAGGTGTTCTTGGCAACGAGAATATTGCAGCAGAATGA
AA sequence Show only first row Show all	>Lus10020507 pacid=23139530 polypeptide=Lus10020507 locus=Lus10020507.g ID=Lus10020507.BGIv1.0 annot-version=v1.0 MIKRFPSRNSRSKGIKVKHVLQICLLLGVCFWLIYQVKHSHDKKKEFDEKDAEVASRGQSDHEKPKFGRKDLQPRVDDVAKNEKAGEDEDDETMAEEVIN GGENKHAEGVGQEHEVTKHEDEEREDISKQEDEEMDEDETKHEEEVQEEEKKVDESEEDGRGAGDDEIDEHDHDKLEAENVEEDAIDEEKEKAEEDNEKE GEVNKDDGKDVEVDHEASLKDGDHDDGSQNTHDHEAREEHYRADDASSAVTHDALTIESGKEILDSTNGTTDVQEDEIAKNSVTANLNSTSQLDKGDIAA NRSLDATVGELKDEKISLPSSDNTTFTMVSDDHQQKSDESAAVNPETGENSTDTTSLANSTSVQNATAGESATNEVSNLPTDDTTTEPQRVDDESDSGDL PTDPQRVNNESVSGKDQSTSTPIISEAEDGKSSNSTIDSDSGIHNQTVDDETTGEEEKAKPDENPESQMENPEENQGGGNAEATHDPIDSSDSSVDQEEN AGVLGNENIAAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33740			unknown protein		Lus10020507 [exp]	0	1
					Lus10015758 [exp]	2.4	0.9572
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10007663 [exp]	2.4	0.9512
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	2.8	0.9605
AT2G39725			LYR family of Fe/S cluster bio...		Lus10035952 [exp]	4.0	0.9297
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	4.5	0.9489
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10021914 [exp]	5.1	0.9311
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001782 [exp]	5.3	0.9310
AT1G26665			Mediator complex, subunit Med1...		Lus10024211 [exp]	5.6	0.9214
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002075 [exp]	6.5	0.9462
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	6.7	0.9485

Compare expression of checked genes

Lus10020507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.