Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09650 244 / 1e-81 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1) AT5G13450 53 / 3e-08 ATP5 delta subunit of Mt ATP synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012452 [exp] 441 / 3e-159 AT4G09650 250 / 5e-84 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1) Lus10012618 [exp] 66 / 2e-12 AT4G00895 83 / 2e-19 ATPase, F1 complex, OSCP/delta subunit protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G087300 [exp] 248 / 9e-83 AT4G09650 227 / 9e-75 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1) Potri.013G117000 [exp] 243 / 9e-81 AT4G09650 247 / 8e-83 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1) Potri.014G102100 [exp] 86 / 9e-20 AT4G09650 90 / 3e-21 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0255 [flax] [poplar] ATP_synthase PF00213 [flax] [poplar] OSCP ATP synthase delta (OSCP) subunit
Representative CDS sequence Show only first row Show all	>Lus10020508 pacid=23139593 polypeptide=Lus10020508 locus=Lus10020508.g ID=Lus10020508.BGIv1.0 annot-version=v1.0 ATGGCGTCTCTGAGAAACACCCTCACCTCCACCAATCTCTTCTCCAAATTCTCCACTTCCGCCCATCAATCCAACCACCATCCCTTAACCATCTCCTTCC CTTCTTCCTCTTCCTCCTCCTCATCCTCCAATTTCCCCTCTCTCAACCTCCTCAACCGCCGCCCCCGCGGAGGATTGATCGTCGCTATGTCCTCCCCTGT CTCCGAAAGCTACGCCACCGCCTTGCTCGAAGTCGCCCAGAACACCAACACCCTCGAGACCACCTCCGCCGACTTGGAGAAGCTAGCCACCGTCTTCGAA GACCCGGAGCTCTCCGATTACTTCGCCAACCCCCTCATCGACGACGACAAGAAGAAGTCCCTCGTCGAAGAGATCGTCAAGTCCTTGTCTCTCCAGCAGC ACGTCTCCAATTTCCTCAACATCATCGTCGAAGGCCAGAGGGCCGATTCCGTCACTGACATCGTTAAGGAGTTTGAGGCCGCTTACAATCGCTTGACCGA CACCGAGCTAGCCTTGGTCAGCTCCGTTGTCAACCTCGAGTCTCAGCACTTGGCTCAGATTGCCAAGCAGGTTCAGAAGCTGACCGGTGCTAAGAATGTC AGGATCAAGACTTCTCTGGATCCTTCTTTGGTGGCTGGTTTTACTGTTCGCTATGGCAACTCTGGTTCCAAGATGATTGATATGAGCGTCAAGAAGCAGT TGGAGGAGATCGCTGCCCAGCTTGAAGTCGGCGATATTCAGCTCGCTGGTGTATGA
AA sequence Show only first row Show all	>Lus10020508 pacid=23139593 polypeptide=Lus10020508 locus=Lus10020508.g ID=Lus10020508.BGIv1.0 annot-version=v1.0 MASLRNTLTSTNLFSKFSTSAHQSNHHPLTISFPSSSSSSSSSNFPSLNLLNRRPRGGLIVAMSSPVSESYATALLEVAQNTNTLETTSADLEKLATVFE DPELSDYFANPLIDDDKKKSLVEEIVKSLSLQQHVSNFLNIIVEGQRADSVTDIVKEFEAAYNRLTDTELALVSSVVNLESQHLAQIAKQVQKLTGAKNV RIKTSLDPSLVAGFTVRYGNSGSKMIDMSVKKQLEEIAAQLEVGDIQLAGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10020508 [exp]	0	1
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10012452 [exp]	1.0	0.9923
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10006188 [exp]	1.4	0.9812
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10028299 [exp]	2.0	0.9680
AT5G52420			unknown protein		Lus10027495 [exp]	2.4	0.9685
AT5G42070			unknown protein		Lus10023063 [exp]	4.9	0.9591
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10002078 [exp]	5.0	0.9609
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10028969 [exp]	6.9	0.9413
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	7.0	0.9540
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10040191 [exp]	7.7	0.9396
AT4G14615			unknown protein		Lus10006639 [exp]	7.9	0.9443

Compare expression of checked genes

Lus10020508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.