Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10020 290 / 1e-92 Protein of unknown function (DUF1005) (.1) AT3G19680 281 / 8e-89 Protein of unknown function (DUF1005) (.1) AT1G50040 276 / 3e-87 Protein of unknown function (DUF1005) (.1) AT4G29310 242 / 9e-75 Protein of unknown function (DUF1005) (.1) AT5G17640 191 / 2e-55 Protein of unknown function (DUF1005) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012451 [exp] 662 / 0 AT3G19680 349 / 1e-115 Protein of unknown function (DUF1005) (.1) Lus10032807 [exp] 305 / 1e-98 AT1G10020 549 / 0.0 Protein of unknown function (DUF1005) (.1) Lus10034991 [exp] 235 / 1e-71 AT4G29310 553 / 0.0 Protein of unknown function (DUF1005) (.1) Lus10012933 [exp] 209 / 4e-63 AT4G29310 434 / 4e-152 Protein of unknown function (DUF1005) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G084000 [exp] 391 / 5e-132 AT1G10020 389 / 3e-132 Protein of unknown function (DUF1005) (.1) Potri.001G288900 [exp] 386 / 4e-130 AT1G10020 365 / 5e-123 Protein of unknown function (DUF1005) (.1) Potri.002G112600 [exp] 319 / 6e-104 AT1G10020 607 / 0.0 Protein of unknown function (DUF1005) (.1) Potri.005G150100 [exp] 305 / 1e-98 AT1G10020 563 / 0.0 Protein of unknown function (DUF1005) (.1) Potri.013G071000 [exp] 178 / 3e-50 AT5G17640 639 / 0.0 Protein of unknown function (DUF1005) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06219 [flax] [poplar] DUF1005 Protein of unknown function (DUF1005)
Representative CDS sequence Show only first row Show all	>Lus10020509 pacid=23139598 polypeptide=Lus10020509 locus=Lus10020509.g ID=Lus10020509.BGIv1.0 annot-version=v1.0 ATGGATCCGTGCCCTTTCGTGCGGATCCTCGTCGGCAACTTAGCCCTCAAGTTCCCCGCCTCCGTCGACGCTTCCGAATCGTCCTCCACTTGCCTTGCTA AGATCAAGTTCAAGGGTTTCTCTACCCAGCTAGCTACTATCCCAATCGTACTCGAACAGGACGATCTCCCCCGCCGCCGACACCATCTCCATCACCACCG CCACCGCAACTCCTCTCTCCAGTCTTCCGCTTCCTCCGCCTCTGCTGCTTCCTCTTCCTCAAATCCAATCTCCTGTAGTAATTCACTTGCTGCCTGCTTC AATCTCGATAAGAATCAGATCGATAAATTCGTCCGCTCCACTAAGAAGTCCAGTGCTAGTTTGACTATCGAGATTTATACTGGTGAGGATGCAGAAGTCG TTGCGTCTTCGTCTTCCGCCGCTGCCTGTTGTTTCTCCAGGCGTAAGTTGATCGGGACGGTGGTTGTACCTCTCGACCTCCTTAAGGCCGAGTTTCGTCC AGTAGTGATGCATAACGGTTGGGTACCGATTGCTGCAAGGAAGAAAGGTGCGGAGCCTGCTCAGTTCTTTCTCAATGTTCGGGTCGAACCTGACCCCAGA TACGTTTTCCAGTTCGAATCGGATCCGGTTTGTAGCCCTCAAGTGTTTCAGGTTCAAGGAAACGTCAAACAAGCTGTGTTCACTTGCAAGTTCAATTTGA GAAACCAGGGAGATCGAAGCTTAATCTCACGGCAATCAATGTCGGGCTCGAGCACACCGAGAAGTTTCCTGCCCTGCGGTGGCGGAGATGGAGAAAGCGA TACGAAAGACCAATTCACCCAAGAGAGGAAAGGTTGGACAATTACAATCCATGACCTATCCGGTTCTCCAGTGGCAATGGCGTCAATGGTAACACCGTTC GTGCCTTCCCCTGGTTCCGATCGGGTCAGCCGATCCAATCCGGGAGCCTGGCTGATTCTCCGGCCTTCATCAGGCACCTGGAAATCCTGGGGACGACTCG AGGCTTGGAGAGAAGCCCGTAAACATCTGGGATACCGCTTCGACCTTCTCCACGACGGGATCACCGCTACACCGACCACGTCCACGCTCGTCAACTCCGT CGTTAACACGAAAGGCCGAGGGAAATTCAACATCGACATGACCGGTGTAGGCGCAACTCCGGTATGCAGCCCACACAGCAGCTGTGATTTCGGGTCGGGG TCTGGGTCCTGGTCCGGGTCGGAACTCGGGTTGGGGATGTTGACCCAGCCGATGTACAAAGGGTTCGTGATGTCGTCGACGGTGGACGGGAAAGGAGGAC AGCCGGAGGTGGAATTGGGGATCCAGCACGTGAGGGATCCACCCCGTGAGCTGCAGGGAGGACGCGGCGGCGTTCGTTGCGCTGGCGGCAGCGGTGGATC TGAGCAGAGAAGCCTGCCGGGTTTTTCCTCGGAAGCTAAGGAAAGGGTTGAGCTTGTGACAGCTGAACTGAGTAAATTTTTGTTTTGTTTTTGTCTTTGT CGTTTAATTTGGAAAGGGTTGTCGTTTTGGGCACAACTTACAGCNNNNNNNNNNTGA
AA sequence Show only first row Show all	>Lus10020509 pacid=23139598 polypeptide=Lus10020509 locus=Lus10020509.g ID=Lus10020509.BGIv1.0 annot-version=v1.0 MDPCPFVRILVGNLALKFPASVDASESSSTCLAKIKFKGFSTQLATIPIVLEQDDLPRRRHHLHHHRHRNSSLQSSASSASAASSSSNPISCSNSLAACF NLDKNQIDKFVRSTKKSSASLTIEIYTGEDAEVVASSSSAAACCFSRRKLIGTVVVPLDLLKAEFRPVVMHNGWVPIAARKKGAEPAQFFLNVRVEPDPR YVFQFESDPVCSPQVFQVQGNVKQAVFTCKFNLRNQGDRSLISRQSMSGSSTPRSFLPCGGGDGESDTKDQFTQERKGWTITIHDLSGSPVAMASMVTPF VPSPGSDRVSRSNPGAWLILRPSSGTWKSWGRLEAWREARKHLGYRFDLLHDGITATPTTSTLVNSVVNTKGRGKFNIDMTGVGATPVCSPHSSCDFGSG SGSWSGSELGLGMLTQPMYKGFVMSSTVDGKGGQPEVELGIQHVRDPPRELQGGRGGVRCAGGSGGSEQRSLPGFSSEAKERVELVTAELSKFLFCFCLC RLIWKGLSFWAQLTXXXX

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19680			Protein of unknown function (D...		Lus10020509 [exp]	0	1
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10010938 [exp]	1.4	0.9187
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039475 [exp]	2.0	0.9002
AT3G19680			Protein of unknown function (D...		Lus10012451 [exp]	3.3	0.8708
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10017050 [exp]	6.0	0.8938
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010939 [exp]	10.8	0.8826
AT1G53400			Ubiquitin domain-containing pr...		Lus10029264 [exp]	10.9	0.8614
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10021370 [exp]	13.3	0.8616
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	14.6	0.8931
AT1G29290			unknown protein		Lus10007309 [exp]	15.3	0.8876
AT4G34320			Protein of unknown function (D...		Lus10040489 [exp]	16.0	0.8846

Compare expression of checked genes

Lus10020509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.