Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03320 162 / 2e-48 RNA-binding ASCH domain protein (.1) AT2G43465 117 / 1e-29 RNA-binding ASCH domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012450 [exp] 268 / 2e-90 AT3G03320 65 / 5e-22 RNA-binding ASCH domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G132100 [exp] 161 / 2e-46 AT2G43465 408 / 9e-142 RNA-binding ASCH domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04266 [flax] [poplar] ASCH ASCH domain
Representative CDS sequence Show only first row Show all	>Lus10020510 pacid=23139554 polypeptide=Lus10020510 locus=Lus10020510.g ID=Lus10020510.BGIv1.0 annot-version=v1.0 ATGGCGCAGCCGTCTTCTCCGGGGAAAATTGCGGTTGACCTTGTGGACGCCATTGATGAACTGTTGAAGTTAACTCTTCAATCTCACATTGCCGGGAAGC TAGAATTTGATTTGGGCTTATCAATCGACTTTTGTGCTGCCCTTCTCGGCCACGATGGAACTTCCCCAGTCCTATCTACCACTGCAACCGGAAGTGCCAC CAACCCTTTATACAAGCTCCTTGCATCAGCCTTATATGCAGAGATAACTACTGGAGAATTTTCTGGACGATCTTCAGAAGAGGACGACTTGAAACAGAAT GGTGGTCAACCTACACAGGCTGCAGCTGAACTAAAAAAGATTATTGAGTCTATAGAGTTTGATCTCCATGTTCAAGAGCCATTCTTCACACAGATGCGAG ATGGCTTGAAAACGGTTGAAGGAAGGTGTGCTAGAGGCTTTTACAATCAAATTCAACCAGGAGCATTGATCCTGTTTAATAAGGCTTTGGTGGTTCAAGT TCAGGGTGTGCATCGTTACACTTCATTTGCCCAGATGTTGGAAACGGAGGGCCTTGACAAAGTCCTTCCTGGTGCAGAAACCATTGATGCAGGTAAAAGC CAGATGTCTATCCTCTTGATTAGTGTGGTTGAAAATGGAGAGTCTTTTACAATCTCCAATGCTAAGAATGAGATGCATACAATACAACGCTTAATTCCAT TGCCCAATCAGGCGTTCAAGTTTACAGAAGGTTTTATACAGAAGAGGAGGAAAGGTCCTATGGTGTCATCGGCATTCATGTTTCAAGAACAGCCATTCAG CCGCATATTTACTTGGCAAAAATTGTTTCTGAATTGCACAGCAGCGGCAAGCTTGAGAGCCTCGTGGGTGGTTTTGAACCACCAGAAGCAAGAGAGAATC AGTGATGCCTTGATCAAAGGTCCATGGTTGAAAGCTGTAGATGAATGTATAAGTCTTTGCTCCCCAGATGTGGTGCAAAAGTGGCAACTTGAAATCTGTA AGAGATGA
AA sequence Show only first row Show all	>Lus10020510 pacid=23139554 polypeptide=Lus10020510 locus=Lus10020510.g ID=Lus10020510.BGIv1.0 annot-version=v1.0 MAQPSSPGKIAVDLVDAIDELLKLTLQSHIAGKLEFDLGLSIDFCAALLGHDGTSPVLSTTATGSATNPLYKLLASALYAEITTGEFSGRSSEEDDLKQN GGQPTQAAAELKKIIESIEFDLHVQEPFFTQMRDGLKTVEGRCARGFYNQIQPGALILFNKALVVQVQGVHRYTSFAQMLETEGLDKVLPGAETIDAGKS QMSILLISVVENGESFTISNAKNEMHTIQRLIPLPNQAFKFTEGFIQKRRKGPMVSSAFMFQEQPFSRIFTWQKLFLNCTAAASLRASWVVLNHQKQERI SDALIKGPWLKAVDECISLCSPDVVQKWQLEICKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03320			RNA-binding ASCH domain protei...		Lus10020510 [exp]	0	1
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10042929 [exp]	14.5	0.7159
AT5G14030			translocon-associated protein ...		Lus10035166 [exp]	35.7	0.6702
AT3G05250			RING/U-box superfamily protein...		Lus10029940 [exp]	231.2	0.5804
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Lus10016647 [exp]	256.8	0.5730

Compare expression of checked genes

Lus10020510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.