Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60440 160 / 5e-48 MADS AGL62 AGAMOUS-like 62 (.1) AT2G24840 154 / 7e-46 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT4G36590 119 / 7e-33 MADS MADS-box transcription factor family protein (.1) AT1G01530 117 / 5e-32 MADS AGL28 AGAMOUS-like 28 (.1) AT1G65360 103 / 1e-26 MADS AGL23 AGAMOUS-like 23 (.1) AT2G34440 94 / 6e-24 MADS AGL29 AGAMOUS-like 29 (.1) AT3G66656 86 / 7e-21 MADS AGL91 AGAMOUS-like 91 (.1) AT1G28460 84 / 8e-20 MADS AGL59 AGAMOUS-like 59 (.1) AT3G04100 84 / 1e-19 MADS AGL57 AGAMOUS-like 57 (.1) AT1G29962 79 / 6e-18 MADS AGL64 AGAMOUS-like 64 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012449 [exp] 436 / 3e-157 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1) Lus10030824 [exp] 129 / 4e-37 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1) Lus10030663 [exp] 125 / 7e-36 AT2G24840 122 / 2e-34 DIANA, AGAMOUS-like 61 (.1) Lus10031073 [exp] 126 / 3e-35 AT5G60440 129 / 5e-36 AGAMOUS-like 62 (.1) Lus10035456 [exp] 122 / 7e-34 AT5G60440 124 / 5e-34 AGAMOUS-like 62 (.1) Lus10015271 [exp] 96 / 4e-24 AT2G24840 114 / 6e-31 DIANA, AGAMOUS-like 61 (.1) Lus10040832 [exp] 92 / 7e-23 AT2G34440 135 / 1e-40 AGAMOUS-like 29 (.1) Lus10016563 [exp] 87 / 5e-21 AT2G34440 134 / 5e-40 AGAMOUS-like 29 (.1) Lus10028490 [exp] 87 / 3e-20 AT4G36590 108 / 3e-28 MADS-box transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G084200 [exp] 196 / 3e-63 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.017G047300 [exp] 184 / 6e-58 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.009G084100 [exp] 181 / 3e-57 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.007G113800 [exp] 179 / 3e-56 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.008G041500 [exp] 144 / 8e-43 AT5G60440 147 / 4e-43 AGAMOUS-like 62 (.1) Potri.004G130900 [exp] 139 / 4e-41 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1) Potri.004G131100 [exp] 130 / 6e-38 AT2G34440 137 / 2e-41 AGAMOUS-like 29 (.1) Potri.009G045900 [exp] 125 / 2e-35 AT3G04100 121 / 2e-34 AGAMOUS-like 57 (.1) Potri.001G251400 [exp] 113 / 5e-31 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1) Potri.009G046100 [exp] 109 / 6e-30 AT5G60440 115 / 6e-32 AGAMOUS-like 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10020511 pacid=23139576 polypeptide=Lus10020511 locus=Lus10020511.g ID=Lus10020511.BGIv1.0 annot-version=v1.0 ATGGTGAAGATGGTAAAGGATAGCAATCGTCAAGTGACCTTCTCCAAACGAAGGTCAGGACTATTCAAGAAGGCCAGTGAGCTATGTACGCTTTGCGGCG TTGAGATTGCCATCATAGTGTTCTCCCCTGGCCAGAAAGCTTTCTCCTTTGGCCACCCGAGCATTCAAGCAGTGGTCGATCGTTTCCTTGCTCGAAATCC ATCAAAAACCGGTGCTAGTTCCTCTTCATCGTCGTCTGTGAACACCTTTGAACAACTTTACGAGGCTCATCGCAATGCACAAGTTCGTGAGCTCAATGGC CAACTTACTCAGGTGGTGCAAGAAGTGGAGAGGGTGAAGAAATATGGGGAGGGGCTTAATCAAGTAAGAAAAGTGAGGCAAAGACAGTACTGGTGGGAGG CACCAATTGGGGAACTTGAGTTGGATCAGCTGCATCAACTCAAGGCATCACTTGAGGAGTTGAGCCAAAATATGACAACCCAAAAGGCCACTTTACTAAA CATGCATAATTCATCCACTCCTCCTCCATTGCAGTTTCTTGGCCCGGCTTCAGCGACTGCTACTGCTAGTTCTGAACGAGCTGATCATCATTCGAACTAC GAAAACTATGAAGACCATGATGTCAAAATGAATTCTGATAATCTTGTGATGATGTCTCAAGGTCTTGATAGTAGTCATTCCAACCACAACTATCAGCATG GATTGTATGGGTCAGGATTCTAA
AA sequence Show only first row Show all	>Lus10020511 pacid=23139576 polypeptide=Lus10020511 locus=Lus10020511.g ID=Lus10020511.BGIv1.0 annot-version=v1.0 MVKMVKDSNRQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPGQKAFSFGHPSIQAVVDRFLARNPSKTGASSSSSSSVNTFEQLYEAHRNAQVRELNG QLTQVVQEVERVKKYGEGLNQVRKVRQRQYWWEAPIGELELDQLHQLKASLEELSQNMTTQKATLLNMHNSSTPPPLQFLGPASATATASSERADHHSNY ENYEDHDVKMNSDNLVMMSQGLDSSHSNHNYQHGLYGSGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10020511 [exp]	0	1
AT5G03100			F-box/RNI-like superfamily pro...		Lus10029952 [exp]	1.0	0.9780
					Lus10021381 [exp]	1.4	0.9577
AT3G13890	MYB	ATMYB26, MS35	MALE STERILE 35, myb domain pr...		Lus10015608 [exp]	1.7	0.9099
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10021393 [exp]	4.2	0.8478
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10021638 [exp]	5.2	0.7320
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026179 [exp]	8.5	0.8737
					Lus10001186 [exp]	9.7	0.8504
AT1G65440		GTB1	global transcription factor gr...		Lus10034231 [exp]	12.2	0.7418
AT3G23350			ENTH/VHS family protein (.1)		Lus10021173 [exp]	12.4	0.8421
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	13.3	0.8421

Compare expression of checked genes

Lus10020511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.