Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07360 631 / 0 C3HZnF MAC5A MOS4-associated complex subunit 5A, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT2G29580 611 / 0 C3HZnF MAC5B MOS4-associated complex subunit 5B, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT5G07060 415 / 2e-143 C3HZnF MAC5C MOS4-associated complex subunit 5C, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2) AT5G04210 102 / 3e-25 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT1G47490 66 / 1e-11 ATRBP47C RNA-binding protein 47C (.1.2) AT1G47500 66 / 3e-11 ATRBP47C' RNA-binding protein 47C' (.1) AT1G49600 61 / 1e-09 ATRBP47A RNA-binding protein 47A (.1) AT3G19130 57 / 1e-08 ATRBP47B RNA-binding protein 47B (.1) AT5G54900 56 / 3e-08 ATRBP45A RNA-binding protein 45A (.1) AT1G11650 55 / 7e-08 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037244 [exp] 731 / 0 AT1G07360 616 / 0.0 MOS4-associated complex subunit 5A, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Lus10035658 [exp] 727 / 0 AT1G07360 633 / 0.0 MOS4-associated complex subunit 5A, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Lus10012448 [exp] 358 / 3e-123 AT1G07360 250 / 1e-81 MOS4-associated complex subunit 5A, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Lus10021754 [exp] 64 / 1e-10 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10014029 [exp] 61 / 5e-10 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10012071 [exp] 61 / 1e-09 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10012070 [exp] 60 / 2e-09 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10019889 [exp] 59 / 3e-09 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10027911 [exp] 58 / 5e-09 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G041600 [exp] 711 / 0 AT1G07360 629 / 0.0 MOS4-associated complex subunit 5A, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.009G041400 [exp] 454 / 8e-158 AT1G07360 379 / 1e-128 MOS4-associated complex subunit 5A, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.009G105300 [exp] 65 / 5e-11 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.002G128100 [exp] 65 / 6e-11 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.014G034600 [exp] 64 / 8e-11 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.004G143400 [exp] 62 / 3e-10 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G054400 [exp] 57 / 1e-08 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G237200 [exp] 51 / 1e-06 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G138400 [exp] 50 / 3e-06 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G423400 [exp] 49 / 5e-06 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10020512 pacid=23139538 polypeptide=Lus10020512 locus=Lus10020512.g ID=Lus10020512.BGIv1.0 annot-version=v1.0 ATGGCACATAGACTACTGAGAGATGTTGAAGCTGATGGCTGGGAACGATCAGACTTCCCGATTATATGCGAGTCTTGTCTTGGTGACAATCCATATGTTC GAATGACAAAAGCTCAATTCGATAAAGAGTGCAAGATATGTACCCGTCCTTTTACCGTTTTTAGGTGGAGGCCAGGCCGTGACGCCAGATACAAAAAAAC TGAGATTTGCCAGACATGCTGCAAGTTGAAAAATGTCTGTCAAGTCTGCCTTCTGGATCTGGAGTATGGCCTGCCTGTGCAGGTTCGGGATACTGCTCTG AGCATCAATTCAACTGATGCTATTCCAAAGAGTGATGTAAATAGGGAGTATTTTGCCGAGGAGCATGATCGCCGGGCTAGAGCTGGGATTGATTATGAAT CTTCATATGGAAAGGCGAGGCCAACTGACACTATTATGAAGCTTCAAAGAACTTCACCATATTACAAAAGAAACCGAGCACATGTTTGCAGTTTCTATAT AAGGGGTGAGTGCACACGTGGTGCTGAATGCCCTTATCGGCACGAAATGCCTGTAACTGGGGAGTTATCACAGCAAAACATAAAAGATCGTTACTATGGG GTGAATGATCCAGTGGCGATGAAACTACTTAACCAGGCTGGTGAGATGCCTTCGCTTGAACCACCCGGGGATGAAAGCATAAGAACTCTGTACGTTGGCG GCCTTGATGCTAGGATCAGCGAGCAGGATCTAAGAGATAATTTCTATGCACACGGGGAGATTGAATCCATAAAGATGGTGCCTCAACGAGCAATTGCATT TGTGGCATATACGACCAGAGAAGGTGCAGAGAAGGCTGCGGAAGAACTCTCAAACAAACTTGTAATCAATGGTCTGAGGCTGAAGCTTATGTGGGGTAGA CCTCGAGCACCAAAACCAGATTCCGATGTCTCCGAGGAAGCAAGGCAGCAGGCACTGATGGCTCATGGTGGAATGCTGCCGCGAGCTGTGATATCCCAAC AGAACCCGGAGCAGCCTCCTCAATCGATGCAGTACTTCAACATTCCACCTCCACCTCAGCAAGAGCGAGCTTTTTACCCATCCATGGATCCTCAGAGAAT GGGTGCCGTAATTCCTTCCCAGGATGGGGCTTCGAGTTCAGCTGGAGGGTCTGGTGAGAAAAATCCCGGTGGGGAGCAGCAGCAACATCATTACCCTTAT CAGGGCATGCCTCGGCCTCCAATGGTACAACATGGGAAGTTTCACCAACAACAGTATCCACCTCCTCCCTATGGATATATGCGACCACCGCCACCACAGT ATCAGCAGTACCCACCGTACACATCAGGAATGGCTCCACCACAGAGTGGCCAACAGTACCAACATTTTGGACCTCCACCACCTTCAAGGCCAGCAGCTGC TCCAGAGTCTAGCGCACCGGCGCCTCAGTCAAACCAATGA
AA sequence Show only first row Show all	>Lus10020512 pacid=23139538 polypeptide=Lus10020512 locus=Lus10020512.g ID=Lus10020512.BGIv1.0 annot-version=v1.0 MAHRLLRDVEADGWERSDFPIICESCLGDNPYVRMTKAQFDKECKICTRPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTAL SINSTDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKARPTDTIMKLQRTSPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYG VNDPVAMKLLNQAGEMPSLEPPGDESIRTLYVGGLDARISEQDLRDNFYAHGEIESIKMVPQRAIAFVAYTTREGAEKAAEELSNKLVINGLRLKLMWGR PRAPKPDSDVSEEARQQALMAHGGMLPRAVISQQNPEQPPQSMQYFNIPPPPQQERAFYPSMDPQRMGAVIPSQDGASSSAGGSGEKNPGGEQQQHHYPY QGMPRPPMVQHGKFHQQQYPPPPYGYMRPPPPQYQQYPPYTSGMAPPQSGQQYQHFGPPPPSRPAAAPESSAPAPQSNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10020512 [exp]	0	1
AT5G14540			Protein of unknown function (D...		Lus10032138 [exp]	1.4	0.9073
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10027441 [exp]	2.0	0.8494
AT5G55500		ATXYLT	"beta-1,2-xylosyltransferase",...		Lus10016585 [exp]	2.4	0.8398
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10000883 [exp]	7.1	0.8367
AT2G20330			Transducin/WD40 repeat-like su...		Lus10024967 [exp]	13.7	0.7961
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	15.2	0.8286
AT2G42910			Phosphoribosyltransferase fami...		Lus10010935 [exp]	17.3	0.8331
AT1G17070			GC-rich sequence DNA-binding f...		Lus10000930 [exp]	19.3	0.8371
AT2G32710		ICK7, ACK2, KRP...	KIP-RELATED PROTEIN 4, INTERAC...		Lus10032611 [exp]	20.6	0.7359
AT4G15470			Bax inhibitor-1 family protein...		Lus10021950 [exp]	21.2	0.8058

Compare expression of checked genes

Lus10020512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.