Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08170 291 / 1e-97 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) AT4G33770 273 / 4e-90 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2) AT5G16760 141 / 7e-40 AtITPK1 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) AT2G43980 42 / 0.0005 ATITPK4 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035662 [exp] 326 / 1e-111 AT4G08170 455 / 2e-161 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10037247 [exp] 302 / 5e-103 AT4G08170 345 / 3e-119 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10032808 [exp] 289 / 7e-97 AT4G08170 500 / 5e-179 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10007689 [exp] 287 / 7e-96 AT4G08170 499 / 2e-178 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10039098 [exp] 145 / 6e-40 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10038765 [exp] 139 / 8e-39 AT5G16760 350 / 4e-121 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10012447 [exp] 118 / 1e-33 AT4G08170 80 / 7e-20 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10035811 [exp] 117 / 2e-30 AT5G16760 311 / 1e-105 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G084600 [exp] 309 / 5e-105 AT4G08170 379 / 1e-131 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.005G149800 [exp] 298 / 1e-100 AT4G08170 518 / 0.0 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.001G140000 [exp] 162 / 2e-47 AT5G16760 372 / 6e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.003G094100 [exp] 161 / 3e-47 AT5G16760 373 / 2e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.019G047200 [exp] 124 / 2e-33 AT5G16760 332 / 1e-113 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.017G007500 [exp] 47 / 9e-06 AT2G43980 534 / 0.0 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF05770 [flax] [poplar] Ins134_P3_kin Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Lus10020513 pacid=23139570 polypeptide=Lus10020513 locus=Lus10020513.g ID=Lus10020513.BGIv1.0 annot-version=v1.0 ATGAGGATAGGTGGGGAAGGGAGAGGAGAAGAGGTGGAGAAAGAAGAGGAAGATGAAGTAGAAGGGATGGAATCTGTATCAATGTCAATGCAACATCAGC AGCAGCAGCAGCAACAGGTGGTGGTTGGCTACGCTTTGACGTCCAAGAAGAAGAAGAGCTTCTTGCAGCCTAAGCTTGAATTGTTAGCCAGAAATAAGGG GATCTTGTTCATTGCCATTGATCTAAACAAACCATTGGGTGATCAAGGCCCTTTTGACATTGTCATACATAAAGATTACAGACAAAAGCATCCAGAAGTA ACAGTGATTGATCCTCCAGATGCTATTAGACATCTAAGTAATCGACAGTCCATGCTCCAATATGTAGCAGACCTGAAATTGTCAGATTTCTATGGTACTG TGTGTATCCCAAGACAAATGGTTATTGACAGAGATCCATCATCCATTGCTCTTGAAGTTTCTAAGGCTGGACTTAAGTTACCATTAGTTGCCAAGCCACT ACTAGTGGATGGAACTGCAAAGTCACATCAGTTGTCTCTTGCATATGATCAGTTCTCTCTCTCAGAACTTGAACCTCCTTTGGTTCTACAAGAGTTTGTC AATCATGGTGGTGTTCTCTTTAAAATCTACATCATGGGAGAATCCATTAAAGTTGTCCGCCGCTTCTCTCTACCTAATGCCAGTAATTGTGAGCTAGAAA AAGTAGCTGGTGTGATGCGGTTCCCCCGAGTTTCATGTGCTGCAGCCTCTGCAGATGATGCTGATTTGGATCCTTCAGTTGCAGGTTATGGGAAAATGCC AGACTATGAGCACCTCTTCACAGATTTCCTACTCAGTGAAGCGCAGAGTAAACAGAAGAAAGGACAGGCTGCTTGA
AA sequence Show only first row Show all	>Lus10020513 pacid=23139570 polypeptide=Lus10020513 locus=Lus10020513.g ID=Lus10020513.BGIv1.0 annot-version=v1.0 MRIGGEGRGEEVEKEEEDEVEGMESVSMSMQHQQQQQQQVVVGYALTSKKKKSFLQPKLELLARNKGILFIAIDLNKPLGDQGPFDIVIHKDYRQKHPEV TVIDPPDAIRHLSNRQSMLQYVADLKLSDFYGTVCIPRQMVIDRDPSSIALEVSKAGLKLPLVAKPLLVDGTAKSHQLSLAYDQFSLSELEPPLVLQEFV NHGGVLFKIYIMGESIKVVRRFSLPNASNCELEKVAGVMRFPRVSCAAASADDADLDPSVAGYGKMPDYEHLFTDFLLSEAQSKQKKGQAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10020513 [exp]	0	1
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10041396 [exp]	1.7	0.8622
AT4G37440			unknown protein		Lus10014864 [exp]	4.9	0.8208
AT1G05170			Galactosyltransferase family p...		Lus10020042 [exp]	5.9	0.8015
AT5G11960			Protein of unknown function (D...		Lus10004444 [exp]	6.5	0.7986
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Lus10034658 [exp]	7.9	0.8112
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10028605 [exp]	8.5	0.7966
AT5G01220		SQD2	sulfoquinovosyldiacylglycerol ...		Lus10002499 [exp]	8.9	0.7657
AT2G30350			Excinuclease ABC, C subunit, N...		Lus10024187 [exp]	10.4	0.7309
AT1G55535			unknown protein		Lus10010333 [exp]	12.2	0.8035
AT5G01220		SQD2	sulfoquinovosyldiacylglycerol ...		Lus10004832 [exp]	13.4	0.7678

Compare expression of checked genes

Lus10020513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.