Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29590 257 / 1e-80 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT3G29635 254 / 2e-79 HXXXD-type acyl-transferase family protein (.1) AT5G39080 246 / 2e-76 HXXXD-type acyl-transferase family protein (.1) AT5G39090 244 / 9e-76 HXXXD-type acyl-transferase family protein (.1) AT3G29670 239 / 8e-74 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G39050 235 / 4e-72 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT5G61160 234 / 6e-72 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT3G29680 215 / 1e-64 HXXXD-type acyl-transferase family protein (.1) AT1G03495 210 / 2e-62 HXXXD-type acyl-transferase family protein (.1) AT1G03940 210 / 3e-62 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005362 [exp] 772 / 0 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10021389 [exp] 572 / 0 AT3G29590 295 / 4e-95 HXXXD-type acyl-transferase family protein (.1) Lus10021388 [exp] 555 / 0 AT3G29635 278 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 521 / 0 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 348 / 2e-115 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 333 / 2e-109 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10035802 [exp] 316 / 3e-102 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 298 / 5e-96 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10029276 [exp] 285 / 4e-91 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G103200 [exp] 372 / 3e-125 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 360 / 2e-120 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 358 / 1e-119 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 335 / 2e-110 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 335 / 2e-110 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 333 / 1e-109 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 333 / 1e-109 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 327 / 2e-107 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G120700 [exp] 326 / 4e-107 AT5G39050 343 / 1e-113 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.010G208100 [exp] 314 / 3e-102 AT5G39050 332 / 3e-109 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10020514 pacid=23172298 polypeptide=Lus10020514 locus=Lus10020514.g ID=Lus10020514.BGIv1.0 annot-version=v1.0 ATGTCAACAACTCAAATTATTGAGATTTGTCAAGTGACTCCTTCACCACTTCCAATCTCCGATTTCTCCCTGCCGCTCACTTTCTTCGATACTTTCTGGC TCAAATTGTCCCCCGTCGAACGAATCTTCTTCTACCGTCTCTCTTCCTCCACCTCCTCCGAAAATGACGTCATCATTCCCCGGTTGAAGCGCTCCCTCTC CGTCGCCCTTGGCCATTTCCTCCCGCTCGCCGGGAAACTTACCTGGCCGGAACACGCCGAGGTGCCCTTCATCCTCTACACGCCTCAAAACGACGGTGTT TCGCTAACCATCGCCGAGGCGACTGACGGGGATAGCTTCGACCTTCTTTCGAGAGATGGGCCCCGAGAGGTCAGCCTATCGCGAGCTTACGTGCCAAAGC TCGAGGTTTCGGGGTCCAACGCTGGCGTTTTGGCCTTGCAGGTGACGGTGTTCCAAGGCAAGGGGTTTTGTGTCGGCGTCACTTCTCATCACGCCGTTCT CGACGGGAAGAGCTCCGTTATGTTTATGAAGGCGTGGGCGCATCTTAGCAAGGAGTTGGGTAACGGTGGTGAGTGTGGAGAGTTGACGGAGGAGCTGACG CCGTTTCTTGATCGGACGGATGTGAATGACCCGGATGGTATTGCTTTGGAAGACGTGAAGGCTTGGACGGCGGTGAATAACGCCAGTAATAGTTTTGTGA GAAGTTTGGAGCTTCTGTCGGATATTATTCTTCCGGCTAGCAGATCGAATCAGGTACGGGGAGCATTCAAGTTGTCACGAAAAGACATCAACCAACTCAA AAAAATCGCACAACACCAACTCGAAATGGTCGACAACCAAGACCATAACCAATCAATCGAACCGAAAAACTTGTCGACTTTCGTGGTAACCTTGGCGCAC ACATTGGTATGCATGGCTAAAGCGAAGGAGTACGGCGACGACAAAGCTGCGATATTCGGGTTCACCGCCGACTGCAGGTCGCGGTTGGATCCACCGCTGC CGGCGAACTACTTTGGGAACTGTGTCATGGGCTTTCCGGCTCCCGCCATGAAGATCGGAGATCTGGTTCACGACGGCGGGATCGCACGTGTGGCTCGTAA GGTTATCGAGGTGATAAAAAAAGTAGATCACAATGCTCTGGAGGGAGCCAAGGGGAAGCTAGGAAGGATCATGCAGTTGGTTTCAAAGAAAGAGGAGGGG CTCGTCGGGGTAGGTGTGGCCGGGTCGCCTCGATTAGGGGTTTACGATGTCGATTTTGGGTTCGGCAGGCCGGAGATGGTGGAGGTGACGTCGATAGATA GAACTTCTGCGATATCGATGGCGGAGAGCGGCGACGGAAGTGGTGGCGTTGAAGTTGGTGTGGTTATGTTGAGGCATGAGATAGACAAGTTTGCCTCTCT ATTCTTTGATATGGCCTTTAATTAA
AA sequence Show only first row Show all	>Lus10020514 pacid=23172298 polypeptide=Lus10020514 locus=Lus10020514.g ID=Lus10020514.BGIv1.0 annot-version=v1.0 MSTTQIIEICQVTPSPLPISDFSLPLTFFDTFWLKLSPVERIFFYRLSSSTSSENDVIIPRLKRSLSVALGHFLPLAGKLTWPEHAEVPFILYTPQNDGV SLTIAEATDGDSFDLLSRDGPREVSLSRAYVPKLEVSGSNAGVLALQVTVFQGKGFCVGVTSHHAVLDGKSSVMFMKAWAHLSKELGNGGECGELTEELT PFLDRTDVNDPDGIALEDVKAWTAVNNASNSFVRSLELLSDIILPASRSNQVRGAFKLSRKDINQLKKIAQHQLEMVDNQDHNQSIEPKNLSTFVVTLAH TLVCMAKAKEYGDDKAAIFGFTADCRSRLDPPLPANYFGNCVMGFPAPAMKIGDLVHDGGIARVARKVIEVIKKVDHNALEGAKGKLGRIMQLVSKKEEG LVGVGVAGSPRLGVYDVDFGFGRPEMVEVTSIDRTSAISMAESGDGSGGVEVGVVMLRHEIDKFASLFFDMAFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10020514 [exp]	0	1
AT5G48630			Cyclin family protein (.1.2)		Lus10003151 [exp]	4.7	0.9309
AT1G79790		AtcpFHy1	flavin mononucleotide hydrolas...		Lus10009551 [exp]	6.3	0.8885
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10024608 [exp]	11.9	0.8311
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	16.7	0.9022
AT5G41810			unknown protein		Lus10001907 [exp]	23.6	0.8912
AT1G49790			F-box associated ubiquitinatio...		Lus10038938 [exp]	23.7	0.8374
AT1G55170			unknown protein		Lus10037647 [exp]	26.3	0.8139
					Lus10024524 [exp]	27.3	0.8228
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10007914 [exp]	29.9	0.8335
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10029172 [exp]	32.3	0.8718

Compare expression of checked genes

Lus10020514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.