Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22840 656 / 0 Protein kinase superfamily protein (.1) AT3G44850 653 / 0 Protein kinase superfamily protein (.1) AT3G53030 342 / 9e-112 SRPK4 ser/arg-rich protein kinase 4 (.1) AT2G17530 246 / 8e-77 Protein kinase superfamily protein (.1.2.3) AT4G35500 246 / 9e-76 Protein kinase superfamily protein (.1.2) AT4G24740 100 / 2e-22 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT4G32660 99 / 2e-22 AME3 Protein kinase superfamily protein (.1.2.3) AT1G73450 100 / 5e-22 Protein kinase superfamily protein (.1) AT1G73460 100 / 8e-22 Protein kinase superfamily protein (.1) AT2G40120 98 / 2e-21 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005363 [exp] 951 / 0 AT3G44850 681 / 0.0 Protein kinase superfamily protein (.1) Lus10005364 [exp] 757 / 0 AT3G53030 653 / 0.0 ser/arg-rich protein kinase 4 (.1) Lus10020516 [exp] 741 / 0 AT3G53030 647 / 0.0 ser/arg-rich protein kinase 4 (.1) Lus10016690 [exp] 248 / 3e-76 AT4G35500 683 / 0.0 Protein kinase superfamily protein (.1.2) Lus10035984 [exp] 244 / 6e-75 AT4G35500 694 / 0.0 Protein kinase superfamily protein (.1.2) Lus10025301 [exp] 102 / 4e-23 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10031328 [exp] 97 / 8e-23 AT1G73450 405 / 6e-135 Protein kinase superfamily protein (.1) Lus10024431 [exp] 101 / 1e-22 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10019458 [exp] 99 / 7e-22 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G151500 [exp] 701 / 0 AT3G44850 735 / 0.0 Protein kinase superfamily protein (.1) Potri.004G190400 [exp] 697 / 0 AT3G44850 769 / 0.0 Protein kinase superfamily protein (.1) Potri.006G117800 [exp] 674 / 0 AT3G53030 740 / 0.0 ser/arg-rich protein kinase 4 (.1) Potri.007G063100 [exp] 251 / 2e-77 AT2G17530 679 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G102100 [exp] 249 / 1e-76 AT2G17530 703 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G244400 [exp] 100 / 1e-22 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.019G043400 [exp] 99 / 1e-21 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.006G213400 [exp] 97 / 2e-21 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.015G085700 [exp] 97 / 3e-21 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.012G089700 [exp] 96 / 4e-21 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10020515 pacid=23172271 polypeptide=Lus10020515 locus=Lus10020515.g ID=Lus10020515.BGIv1.0 annot-version=v1.0 ATGGCGGAGGCCGGTGACGGAGACCGAAGTGAGCTGAGTGACTACTCTGAGTCGTCGTCGTCGGAAGACGAAGGAACTCAGGATTACAGGAGAGGCGGAT ATCACCCTGTTCGGATTGGCGACTCCTTCAGGAACGGGCGATACGTTGTTCAGAGTAAGCTTGGCTGGGGCCATTTCTCCACTGTCTGGCTAGCTTGGGA CACTCATGGATCTGGGGGTTATGTAGCATTGAAAGTTCAAAAGAGTGCTCAACACTATACCGAAGCGGCCATGGACGAGATAAAGCTCTTGAAGCAGATT GCTGAGGGAGATCCAGATGATAAGTATTGTTGTGTCAAGCTTTTGGATCATTTCAAGCATTCGGGGCCGAATGGGCAGCACGTCTGTATGGTTTTTGAGT ACTTAGGGGATAACTTATTGACACTTATCAAGTACAGCGACTACCGGGGTGTTCCTTTGAGCAAGGTGAAAGAGTTATGCTATCACATTTTGGTGGGGTT AGATTACTTGCATCGCAAACTTTTGATCATCCATACTGATTTGAAGCCGGAGAATGTTCTCCTCTCGTCGACAATTGATCCTTCTAAGGATCATAGAAAG ACTGGAACTCCTTTGATCCTCCCGACGAACAAGGGCAAACTCGTGGCCGATTCTTTGTCTTCTTTGAAAGACGGTAAGAGTTCGAATGGGGGTTTGACGA AGAACCAGAAAAAGAAGATAAGGAAGAAGGCTAAGAAGTCGGCTCCTGATTGCGGTGCCGGTGATAGAGAAGAGTTGGATGAGAACGAAGCCAATAAGAG AAACCCCGACCCTGAGGGCTCGTCCAGTCTTGACACTAAACGGCATGATGACCATGGTGAGGAGCAATCGAGCAGCGCCCTTATCGACAGTAAATCGACG AGATCCGATGACAAGAAGGATGAATCTGGAGCAATGCAGGATCATAGAAGGGGAAGCCGTGCTGCAAGGAAACAGCTATTGGATTCTGCCGATCTGAGTT GCAAGTTGGTCGATTTTGGGAATGCTTGTTGGACGTACAAACAGTTCACCAGTGACATCCAGACGAGGCAGTATCGGTGTCCTGAGGTCATACTTGGAGC TAAATATTCGACTCCGGCAGATCTATGGTCTTTGGCTTGTATTTGCTTCGAACTGGCTACTGGTGATGTCCTTTTTGATCCTCACAGTGGCGACAACTAT GACAGGGATGAGGATCATTTAGCATTGATGATCGAGCTTCTTGGTGTGATGCCCCGTAAGATTTCGTTGGGTGGTCGGTACTCGAAGGACTTCTTCAACA AGTATGGAGACCTAAGGCACATCCGGAGGTTACGATTCTGGCCTCTTCACAAAGTCCTCAACGAAAAGTACAGTTTTAGCGAGCAGGACGCACAAGAGAT GGCCGATTTCTTAGTACCTTTACTCGAATACGCACCGGAAAAGCGGCCCACTGCAGCTCAGTGCCTTAACCATCCATGGATCCTTTCGGTCCCTCGTCCC CTAAAGACTTCACCCCAGGCTCCTGCCTGTGTCGATGGAAGCACCATGGAGAAGAACAAGGACGAGAGAGAAGCCATGGAAGCCGGAGTAGAGAAGATAG CCATCAATGGCACCTCAAAGTAA
AA sequence Show only first row Show all	>Lus10020515 pacid=23172271 polypeptide=Lus10020515 locus=Lus10020515.g ID=Lus10020515.BGIv1.0 annot-version=v1.0 MAEAGDGDRSELSDYSESSSSEDEGTQDYRRGGYHPVRIGDSFRNGRYVVQSKLGWGHFSTVWLAWDTHGSGGYVALKVQKSAQHYTEAAMDEIKLLKQI AEGDPDDKYCCVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGVPLSKVKELCYHILVGLDYLHRKLLIIHTDLKPENVLLSSTIDPSKDHRK TGTPLILPTNKGKLVADSLSSLKDGKSSNGGLTKNQKKKIRKKAKKSAPDCGAGDREELDENEANKRNPDPEGSSSLDTKRHDDHGEEQSSSALIDSKST RSDDKKDESGAMQDHRRGSRAARKQLLDSADLSCKLVDFGNACWTYKQFTSDIQTRQYRCPEVILGAKYSTPADLWSLACICFELATGDVLFDPHSGDNY DRDEDHLALMIELLGVMPRKISLGGRYSKDFFNKYGDLRHIRRLRFWPLHKVLNEKYSFSEQDAQEMADFLVPLLEYAPEKRPTAAQCLNHPWILSVPRP LKTSPQAPACVDGSTMEKNKDEREAMEAGVEKIAINGTSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22840			Protein kinase superfamily pro...		Lus10020515 [exp]	0	1
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10041455 [exp]	1.4	0.8297
AT3G44850			Protein kinase superfamily pro...		Lus10005363 [exp]	4.0	0.7967
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Lus10012922 [exp]	5.3	0.7786
AT1G51310			transferases;tRNA (5-methylami...		Lus10039111 [exp]	6.5	0.7529
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10042965 [exp]	8.0	0.7361
AT2G03820			nonsense-mediated mRNA decay N...		Lus10023975 [exp]	8.9	0.7352
AT3G22430			unknown protein		Lus10021918 [exp]	11.2	0.7073
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	11.5	0.7892
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10043008 [exp]	12.4	0.6937
AT2G30120			unknown protein		Lus10042267 [exp]	13.0	0.7227

Compare expression of checked genes

Lus10020515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.