Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53030 588 / 0 SRPK4 ser/arg-rich protein kinase 4 (.1) AT3G44850 582 / 0 Protein kinase superfamily protein (.1) AT5G22840 574 / 0 Protein kinase superfamily protein (.1) AT4G35500 449 / 6e-155 Protein kinase superfamily protein (.1.2) AT2G17530 429 / 2e-147 Protein kinase superfamily protein (.1.2.3) AT1G73450 105 / 2e-23 Protein kinase superfamily protein (.1) AT4G32660 101 / 2e-23 AME3 Protein kinase superfamily protein (.1.2.3) AT1G73460 104 / 3e-23 Protein kinase superfamily protein (.1) AT4G24740 101 / 6e-23 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT2G40120 98 / 1e-21 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005364 [exp] 811 / 0 AT3G53030 653 / 0.0 ser/arg-rich protein kinase 4 (.1) Lus10005363 [exp] 710 / 0 AT3G44850 681 / 0.0 Protein kinase superfamily protein (.1) Lus10020515 [exp] 708 / 0 AT5G22840 684 / 0.0 Protein kinase superfamily protein (.1) Lus10016690 [exp] 451 / 2e-155 AT4G35500 683 / 0.0 Protein kinase superfamily protein (.1.2) Lus10035984 [exp] 448 / 1e-154 AT4G35500 694 / 0.0 Protein kinase superfamily protein (.1.2) Lus10031328 [exp] 102 / 8e-25 AT1G73450 405 / 6e-135 Protein kinase superfamily protein (.1) Lus10042297 [exp] 103 / 9e-23 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10019458 [exp] 101 / 9e-23 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10031902 [exp] 102 / 1e-22 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G151500 [exp] 616 / 0 AT3G44850 735 / 0.0 Protein kinase superfamily protein (.1) Potri.004G190400 [exp] 606 / 0 AT3G44850 769 / 0.0 Protein kinase superfamily protein (.1) Potri.006G117800 [exp] 599 / 0 AT3G53030 740 / 0.0 ser/arg-rich protein kinase 4 (.1) Potri.007G063100 [exp] 456 / 6e-158 AT2G17530 679 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G102100 [exp] 453 / 1e-156 AT2G17530 703 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G244400 [exp] 102 / 2e-23 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G085700 [exp] 99 / 3e-22 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.019G043400 [exp] 100 / 5e-22 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.015G033400 [exp] 100 / 5e-22 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.012G039700 [exp] 100 / 6e-22 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10020516 pacid=23172387 polypeptide=Lus10020516 locus=Lus10020516.g ID=Lus10020516.BGIv1.0 annot-version=v1.0 ATGGCGGAGTCCGGCGCCGGAGACCGCAGCGAGCTGAGCGACTACTCCTCGTCGTCATCATCGGAAGACGAAGGATCTGAAGAGTACAGGAGAGGCGGAT ATCATCCTGTCCGGATCGGCGACTCCTTCAGGAACGGACGATACATTGTTCAGAGCAAGCTTGGCTGGGGCAACTTCTCCACTGTCTGGCTAGCTTGGGA CACTCAAGGATCTGGTTATGTAGCTCTGAAAGTTCAAAAGAGTGCTCAAAACTTTACCGAGGCGGCCATGGGCGAGATAGAGAGATTGAATCAGATTGCA GAAGGAGATCCGGATGATAAGTATGGCTGTGTGAAGCTTTTGGATCATTTCAAGCATTTGGGGCCGAATGGACAGCACGTCTGTATGGTTTTCGAGTACT TGGGGGATAACTTGTTGACACTTATCAAGTACAGCGACTACAAGGGTGTTCCTTTGAGCAAGGTGAAAGAGTTATGCTATCACATTCTGGTGGGGTTAGA TTACTTGCACAGTAAACTTTCGATCATCCATACTGATTTGAAGCCGGAGAATGTCCTCCTCTCGTCGACCATTGATCCTTGTAAGGATCATAGGAAGACC GGTGCTCCTTTGATCCTCCCGACAAGCAAAGATAAACTCGTGAGTGAGTCTTTGTCTTCTTTGATAGAGACGGGTAAGAGTTCGAATGGGGGTTTGGTAA AGAACCATAAAGAGAAGATAAGGAAGAGGGTTAAGAAGCCGGCTTCGGGTTGTGGTGATAGAGAAGAGTTGGAAGAGAATGAAGCTAATGAGAGAAACCG TGAGGGCTCGTCAAGTCTTGATACTAAACGACATGATGATCATAGAAGGGGAAAGCGTGCTGCAAAGAGAAAGCTATTGGATTCGGCTGATCTGAGTTGC AAGTTGGTTGATTTTGGTAATGCGTGTTGGACGTACAAACAGTTCACGAGTGACATCCAGACGAGGCAGTATCGGTGTCCTGAAGTCATCCTTGGAACAA AATACTCGACACCAGCAGATCTATGGTCGTTGGCTTGTATTTGCTTCGAACTGGCTACTGGTGACGTCCTTTTCGATCCTCACAATGGCGACAACTATGA CCGGGATGAGGATCATTTAGCATTGATGATCAAGCTTCTTGGTGCGATGCCTCGTAAGATATCGTTGGGTGGTCGGAATTCCAAGGACTTCTTCAACAAG TACGGAGACCTGAAGCACATCCGTAGGTTGCGGTTCTGGCCACTCCGCAAAATGCTCAGCGAGAAGTACGGTTTCAGCGAGCAAGATGCACAAGAGATGG CCGACTTCTTATTACCCTTACTCGAATATGCACCGGAAAAGCGGCCGACTGCAGCTGATTGCCTTAACCATCCATGGATCCTTTCGTCCCCTCGTCTCCT GAAGCCTAAACCTCCGGCTCTTCCCACCTTGGAGAAGAAGACCAAGGACGAGAGGGAAGCCATAGAAGCTGGAGTTAAAAAGATAGCCATCAATGGCACC TCGATTCCGTCTCCTCGACCATTCAAGTAA
AA sequence Show only first row Show all	>Lus10020516 pacid=23172387 polypeptide=Lus10020516 locus=Lus10020516.g ID=Lus10020516.BGIv1.0 annot-version=v1.0 MAESGAGDRSELSDYSSSSSSEDEGSEEYRRGGYHPVRIGDSFRNGRYIVQSKLGWGNFSTVWLAWDTQGSGYVALKVQKSAQNFTEAAMGEIERLNQIA EGDPDDKYGCVKLLDHFKHLGPNGQHVCMVFEYLGDNLLTLIKYSDYKGVPLSKVKELCYHILVGLDYLHSKLSIIHTDLKPENVLLSSTIDPCKDHRKT GAPLILPTSKDKLVSESLSSLIETGKSSNGGLVKNHKEKIRKRVKKPASGCGDREELEENEANERNREGSSSLDTKRHDDHRRGKRAAKRKLLDSADLSC KLVDFGNACWTYKQFTSDIQTRQYRCPEVILGTKYSTPADLWSLACICFELATGDVLFDPHNGDNYDRDEDHLALMIKLLGAMPRKISLGGRNSKDFFNK YGDLKHIRRLRFWPLRKMLSEKYGFSEQDAQEMADFLLPLLEYAPEKRPTAADCLNHPWILSSPRLLKPKPPALPTLEKKTKDEREAIEAGVKKIAINGT SIPSPRPFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Lus10020516 [exp]	0	1
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10005051 [exp]	5.5	0.9001
AT3G50230			Leucine-rich repeat protein ki...		Lus10030067 [exp]	12.6	0.8476
AT5G12300			Calcium-dependent lipid-bindin...		Lus10036036 [exp]	13.7	0.8761
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10027822 [exp]	15.3	0.8761
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10040678 [exp]	16.4	0.8585
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10038364 [exp]	17.6	0.8682
AT1G25370			Protein of unknown function (D...		Lus10035144 [exp]	19.7	0.8760
AT1G01360		PYL9, RCAR1	PYRABACTIN RESISTANCE 1-LIKE 9...		Lus10040916 [exp]	21.9	0.8540
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Lus10022868 [exp]	30.1	0.8686
AT4G28300			Protein of unknown function (D...		Lus10033692 [exp]	30.2	0.8232

Compare expression of checked genes

Lus10020516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.