Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22830 531 / 0 MRS2-11, GMN10, ATMGT10 MAGNESIUM TRANSPORTER 10, magnesium (Mg) transporter 10 (.1) AT5G09690 87 / 2e-18 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT1G16010 77 / 5e-15 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT1G80900 65 / 5e-11 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT5G09720 53 / 2e-07 Magnesium transporter CorA-like family protein (.1) AT5G64560 52 / 5e-07 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT2G03620 52 / 7e-07 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005365 [exp] 792 / 0 AT5G22830 558 / 0.0 MAGNESIUM TRANSPORTER 10, magnesium (Mg) transporter 10 (.1) Lus10015459 [exp] 76 / 1e-14 AT3G58970 560 / 0.0 magnesium transporter 6 (.1) Lus10026063 [exp] 66 / 2e-11 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10014353 [exp] 63 / 2e-10 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10001373 [exp] 57 / 1e-08 AT3G58970 450 / 2e-158 magnesium transporter 6 (.1) Lus10024860 [exp] 52 / 5e-07 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10008803 [exp] 51 / 1e-06 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2) Lus10022218 [exp] 50 / 4e-06 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10021887 [exp] 49 / 5e-06 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G151400 [exp] 577 / 0 AT5G22830 496 / 3e-174 MAGNESIUM TRANSPORTER 10, magnesium (Mg) transporter 10 (.1) Potri.003G183600 [exp] 71 / 6e-13 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.006G081700 [exp] 69 / 2e-12 AT3G58970 538 / 0.0 magnesium transporter 6 (.1) Potri.001G043200 [exp] 66 / 2e-11 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.008G161400 [exp] 57 / 9e-09 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.010G077900 [exp] 52 / 5e-07 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.007G098000 [exp] 49 / 5e-06 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1) Potri.008G096200 [exp] 46 / 3e-05 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2) Potri.010G158100 [exp] 45 / 6e-05 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020517 pacid=23172273 polypeptide=Lus10020517 locus=Lus10020517.g ID=Lus10020517.BGIv1.0 annot-version=v1.0 ATGGCTCTTTCCCTTCCTCCGCCGCCGTCTCGTCACCTGCAGTCTCCGATCCACTCTCAACCTCACCATTTCGTCTTCTTCGCTCGCTCGGTACCGCCTC AAGCTTCTCCGCTTACACTCCACCAGATTTCACCGATCTTCGTTCCGCTATGCCTCAAGATTTGCTCCAGGATCAAGTGCTTGACCAAGTCCACCCCGTC GGAGACTCTGGTCCCTGAAGGTGACGAGCCGTCGGAAGACAGCGATGCCGGAGTTCAGCAGCAGAAGCTTCCGCCGGCGTCTTCGTCGTCTTCGTTCGGC GACGCTCTCTCGCTTGGTATCCGCGAGCCAGTTTACGAGGTTGTGGAAGTGAAGGCTGACGGGATCGTTTCTACTAGGAAGATTAGCAGACGCGAGCTGC TGAAATCAAGTGGACTCCGGCCACGGGATGTACGTAGCGTTGATCCATCTTTGTTCCTCACAAACTCAATGCCCTCTTTGTTGGTACGGGAGTATGCTAT CTTGTTGAACTTAGGCTCTCTACGTGCAATCGCTATGCAAGAACGCGTCCTCATATTCGACTACAATCGGAGAGGTGGGAAAGCTTTTATCGATACGTTG CTGCCTCGTTTGAATCCCAAGAACATGAATGGAGGGCCATCCATGCCGTTTGAGTTAGAGGTAGTTGAAGCAGCATTGCTTTCAAGAGTGCAACGGTTGG AGCAGCGATTAATGAAAGTTGAACCCCGAGTTCAAGCGCTGCTCGAAGTACTACCAAACAAGTTAACAGCTAAAATACTGGAGGAGCTACGTATTAGCAA GCAAAACTTGGTCGAGTTGGATTCTAGAGCAGGAGCTCTGAGGCAAATGCTGCTTGATCTCTTGGAAGATCCTCAAGAAATACGGCGGATATGTATAATG GGGAAGAAATGCACTCTGAAGAGAGGGAATGATGATATGGAATGCAGTGTCCCTTTAGAGAAGCAGATTGCTGAGGAGGAAGAGGAAGAAATTGAGATGC TACTGGAGAATTACCTTCAAAGATGCGAATCTTGTCATGGACAGGCAGAAAGGCTTCTCGACTCGGCGAAAGAAATGGAAGATTCCATTGCTGTTCACTT GAGCTCTCGGAGGCTTGAAGTGAGCAGATTCGAGTTACTGCTCCAGGTTGGAACATTCTGCGTCGCCATTGGCGCTCTTGTTGCAGGCATTTTCGGGATG AACTTAAAGTCGTACCTCGAAGAGCATGTGTTTGCATTCTGGCTAACAACAGGAGGGATCATATTCGGAGCCTTTATGGGCTTCTTTCTCATGTTCACCT ATCTCCGTACCAAGAAGATTCTCTAA
AA sequence Show only first row Show all	>Lus10020517 pacid=23172273 polypeptide=Lus10020517 locus=Lus10020517.g ID=Lus10020517.BGIv1.0 annot-version=v1.0 MALSLPPPPSRHLQSPIHSQPHHFVFFARSVPPQASPLTLHQISPIFVPLCLKICSRIKCLTKSTPSETLVPEGDEPSEDSDAGVQQQKLPPASSSSSFG DALSLGIREPVYEVVEVKADGIVSTRKISRRELLKSSGLRPRDVRSVDPSLFLTNSMPSLLVREYAILLNLGSLRAIAMQERVLIFDYNRRGGKAFIDTL LPRLNPKNMNGGPSMPFELEVVEAALLSRVQRLEQRLMKVEPRVQALLEVLPNKLTAKILEELRISKQNLVELDSRAGALRQMLLDLLEDPQEIRRICIM GKKCTLKRGNDDMECSVPLEKQIAEEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVHLSSRRLEVSRFELLLQVGTFCVAIGALVAGIFGM NLKSYLEEHVFAFWLTTGGIIFGAFMGFFLMFTYLRTKKIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10020517 [exp]	0	1
AT2G21340			MATE efflux family protein (.1...		Lus10017964 [exp]	2.8	0.9250
AT3G25805			unknown protein		Lus10022435 [exp]	3.2	0.9360
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10036636 [exp]	3.7	0.9347
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10026895 [exp]	4.8	0.9017
AT1G11960			ERD (early-responsive to dehyd...		Lus10024477 [exp]	4.9	0.8986
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10005365 [exp]	5.2	0.9160
AT2G21340			MATE efflux family protein (.1...		Lus10041955 [exp]	5.3	0.9210
AT1G67840		CSK	chloroplast sensor kinase (.1....		Lus10011413 [exp]	5.5	0.9072
AT5G04440			Protein of unknown function (D...		Lus10038659 [exp]	6.0	0.9052
AT5G01920		STN8	State transition 8, Protein ki...		Lus10014183 [exp]	7.7	0.9238

Compare expression of checked genes

Lus10020517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.