Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22820 393 / 7e-133 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005366 [exp] 562 / 0 AT5G22820 310 / 2e-101 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G151100 [exp] 483 / 2e-167 AT5G22820 499 / 4e-173 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020518 pacid=23172338 polypeptide=Lus10020518 locus=Lus10020518.g ID=Lus10020518.BGIv1.0 annot-version=v1.0 ATGGCTTTGAATTCAATTTCAAACCCGGCAGAAGATGAACAAAACGAACGAGACTATCTCGAACAGCGGGAAGAAGAAGCAGAAGAAGATGCCATAAGAG AAGACGAATCAGCCGATCGACCTTCGCATCACCCTTCCGCACCACCTGACGAGCTGTTCGATTTATCGACTACAGTTGATCCGACATACATAATCTCATT GATAAGAAAGCTTGTTCCAGTAGATGCTAGGAAGGAGGGGAGCCGTCGATCTGGTGGTAATAATGGTATTAAAGGAGGTTCATCCAATGGCGACATGGAT GAGAATGGAGCTATGCTTTCTCTGGAGCGAGGCTTGGACCAAGCTGGCAATAATGAGCATGAGAACATGGACATTGTTGATGACGAATCAGAGGTTTCAC AGGCAGATGATGTATGGGAAGAGTATGGTTGTGTCTTGTGGGATCTTGCTGCAAGTAGAACTCATGCTGAATTAATGGTGCAGAATCTTGTACTTGAAGT GCTTTCAGCTAACCTGACAGTAACCCGATCAGTTCGTGTCAAGGAGATTTGCCTTGGTATCATTGGGAATCTTGGATGTCACAATCTCCCTATGATGCAC ATCATCTCCAAAGAAGGGCTGATTGGGATTATTCTCGATCAACTGTTTCTTGATGATCCTCAGTGCCTGAGTGAAGCTTTTCGGATCTTAACTTTGGGTC TCCAGAGTGGAGAATCTGGTACTTGGGGAGAGGCATTGGAGGCTGATCACATCCTGTCTAGAATTACATGGGTTGCAGAAAACACCTTAAATCCTCAGCT TTTAGGAAAGAGTGTGGAATTCTTGCTAGCTGTTCTCCAAAGTAGAGAGGAAGTGTCAAGTTCCCTTATTCCACCTCTAATGAAGCTAGGCTTGTCAAGT TTACTAATCAATCTCCTCAGTAACGAAATGAGCATGGAAACTGACGAAAGGGGGCCTCAAAGGCTGTCTGTTCTGGACGTAATTCTTCGTGCGATTGAGG CTCTTTCCTCTCTAGATGTTCATTCCCAAGAAATTTGTTCGGACAAGACTCTATTTCGACTAGTTTGTGATGTAATCAAGATTCCAGACAAGGCAGAGGT TGCCAATTCGTGCGTTACCGCTGCAGTTTTACTCGCGAACATGCTTGCCGATGTGCCTGATCTGGCTTCAGAGATGTCCCAGGATTTATCTTTGATGGAG AGTCTATTGGACATATTTCCATTCGCCTCTGATGATCCCGAGGCACGTAGTGCACTCTGGAGCACCATAGCTAGACTGCTGGTCAAAGTCAACGAAACCG AGCTGACTCCCTCGAGTCTGCATCGCTACGTAACTGTCCTTGTCAGAAAATCCGACTCAATCGAGGACGACCTCCTTGACCAGCAAACAGCTCACTCGGG ACGAGGAGAACCGCCCACGGAAAGGGCTGACGAAAAACCAAATGCTAGAAGCATTGCTGTATCCTGCTGA
AA sequence Show only first row Show all	>Lus10020518 pacid=23172338 polypeptide=Lus10020518 locus=Lus10020518.g ID=Lus10020518.BGIv1.0 annot-version=v1.0 MALNSISNPAEDEQNERDYLEQREEEAEEDAIREDESADRPSHHPSAPPDELFDLSTTVDPTYIISLIRKLVPVDARKEGSRRSGGNNGIKGGSSNGDMD ENGAMLSLERGLDQAGNNEHENMDIVDDESEVSQADDVWEEYGCVLWDLAASRTHAELMVQNLVLEVLSANLTVTRSVRVKEICLGIIGNLGCHNLPMMH IISKEGLIGIILDQLFLDDPQCLSEAFRILTLGLQSGESGTWGEALEADHILSRITWVAENTLNPQLLGKSVEFLLAVLQSREEVSSSLIPPLMKLGLSS LLINLLSNEMSMETDERGPQRLSVLDVILRAIEALSSLDVHSQEICSDKTLFRLVCDVIKIPDKAEVANSCVTAAVLLANMLADVPDLASEMSQDLSLME SLLDIFPFASDDPEARSALWSTIARLLVKVNETELTPSSLHRYVTVLVRKSDSIEDDLLDQQTAHSGRGEPPTERADEKPNARSIAVSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22820			ARM repeat superfamily protein...		Lus10020518 [exp]	0	1
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10038148 [exp]	25.0	0.7935
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10017724 [exp]	29.6	0.8041
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10000295 [exp]	41.8	0.7114
AT3G58560			DNAse I-like superfamily prote...		Lus10029338 [exp]	47.6	0.7683
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10004454 [exp]	145.7	0.7011
AT3G59330			Eukaryotic protein of unknown ...		Lus10002279 [exp]	148.3	0.7108
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Lus10012719 [exp]	164.9	0.7238
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10025083 [exp]	225.4	0.7014
AT3G21480			BRCT domain-containing DNA rep...		Lus10033984 [exp]	230.4	0.6916
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10024928 [exp]	238.0	0.7050

Compare expression of checked genes

Lus10020518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.