Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02390 282 / 3e-97 GST18, ATGSTZ1 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) AT2G02380 273 / 7e-94 ATGSTZ2 glutathione S-transferase (class zeta) 2 (.1) AT2G30870 78 / 2e-17 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT5G41210 71 / 1e-14 GSTU12, GST10, ATGSTT1 glutathione S-transferase THETA 1 (.1) AT5G41220 69 / 1e-13 GST10C, ATGSTT3 glutathione S-transferase THETA 3 (.1) AT1G27130 68 / 1e-13 GST12, ATGSTU13 GLUTATHIONE S-TRANSFERASE 12, glutathione S-transferase tau 13 (.1) AT2G30860 67 / 1e-13 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT1G02940 66 / 1e-12 ATGSTF5 glutathione S-transferase (class phi) 5 (.1) AT2G29450 65 / 1e-12 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1) AT5G41240 66 / 2e-12 GST10B, ATGSTT2 glutathione S-transferase THETA 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005367 [exp] 432 / 1e-156 AT2G02390 284 / 4e-98 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10030274 [exp] 257 / 3e-87 AT2G02390 249 / 6e-84 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10004026 [exp] 150 / 3e-46 AT2G02390 143 / 6e-44 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10005368 [exp] 100 / 6e-28 AT2G02390 72 / 8e-18 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10017208 [exp] 71 / 8e-15 AT3G09270 212 / 3e-69 glutathione S-transferase TAU 8 (.1) Lus10029815 [exp] 70 / 2e-14 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10020736 [exp] 69 / 3e-14 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10020735 [exp] 69 / 3e-14 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10029816 [exp] 66 / 7e-13 AT2G30860 308 / 1e-107 glutathione S-transferase PHI 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G232600 [exp] 317 / 9e-111 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Potri.014G069600 [exp] 235 / 1e-78 AT2G02390 204 / 1e-66 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Potri.016G118500 [exp] 74 / 7e-16 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061301 [exp] 73 / 2e-15 AT2G29420 202 / 9e-66 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061800 [exp] 72 / 2e-15 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.017G138800 [exp] 71 / 5e-15 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.015G042000 [exp] 71 / 1e-14 AT2G29460 197 / 7e-64 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) Potri.003G125800 [exp] 69 / 4e-14 AT5G41210 327 / 2e-114 glutathione S-transferase THETA 1 (.1) Potri.010G061600 [exp] 69 / 4e-14 AT2G29420 172 / 7e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G174900 [exp] 68 / 8e-14 AT2G29420 184 / 1e-58 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020519 pacid=23172318 polypeptide=Lus10020519 locus=Lus10020519.g ID=Lus10020519.BGIv1.0 annot-version=v1.0 ATGGCATCGAGCGGCGATGATCATGATCGGATCAAGCTCTACTCTTACTGGCGGAGCTCTTGCTCTTGCCGCGTCCGAATTGCTCTCAACCTCAAAGGGA TTAAGTACGACTATGTAGCCGTTGACTTGGTCAAAGGGGAGCAATCCAGTCCTGAGTTCCTGAAGCTGAATCCTCTTGGTTTTGTGCCGGTTTTGGTGGA TGGAGACATAGTGATTTCTGATTCTTTTGCCATATTGATGTATCTTGAAGAGAAGTACCCCGAGCCCCGACTTTTGCCCAGTGATCTTAGTAAGAGAGCC ATCAATTACCAGGCTGCAAATATAGTCTCATCGAGCATACAGCCTTTCCAGAATTTAGTGGTGCTGAGATATGTCGACGGAAAAATCGACCCACAAACAT GGGCTCGGCATCACATTGAAAGGGGGTTTTCAGCACTGGAGAAACTCCTTAAAGACCATTCTGGAAGATATGCAACAGGAGACGAGGTTTACATGGCAGA TTTGTTTATAGCACCACAGGTTGATGGAGCAATCAGGAGGTTCAAAGTTGACATGAAGCAGTTCCCTCTTCTGCTAGCGCTTCACGAGGCTTACGGTCAA CTCCCCTCAGTTCAGGATGCTATGCCTGAAAGTCAGCCTGACGCCCCATCATCCAACTAG
AA sequence Show only first row Show all	>Lus10020519 pacid=23172318 polypeptide=Lus10020519 locus=Lus10020519.g ID=Lus10020519.BGIv1.0 annot-version=v1.0 MASSGDDHDRIKLYSYWRSSCSCRVRIALNLKGIKYDYVAVDLVKGEQSSPEFLKLNPLGFVPVLVDGDIVISDSFAILMYLEEKYPEPRLLPSDLSKRA INYQAANIVSSSIQPFQNLVVLRYVDGKIDPQTWARHHIERGFSALEKLLKDHSGRYATGDEVYMADLFIAPQVDGAIRRFKVDMKQFPLLLALHEAYGQ LPSVQDAMPESQPDAPSSN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10020519 [exp]	0	1
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	3.0	0.8892
AT5G11680			unknown protein		Lus10027000 [exp]	3.5	0.8988
AT1G12855			F-box family protein (.1)		Lus10042738 [exp]	5.7	0.8686
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	8.8	0.8604
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	10.7	0.8903
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10028575 [exp]	11.3	0.8604
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	11.8	0.8669
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10006676 [exp]	11.9	0.8108
AT3G49060			U-box domain-containing protei...		Lus10036362 [exp]	12.7	0.8078
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042713 [exp]	13.2	0.8065

Compare expression of checked genes

Lus10020519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.