Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10050 86 / 5e-19 OMR1 L-O-methylthreonine resistant 1 (.1) AT4G28520 41 / 0.0003 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022927 [exp] 112 / 2e-28 AT5G44120 424 / 5e-145 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024891 [exp] 108 / 5e-27 AT5G44120 428 / 1e-146 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10014390 [exp] 97 / 4e-23 AT3G10050 845 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10005369 [exp] 97 / 7e-23 AT3G10050 685 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10023884 [exp] 96 / 1e-22 AT3G10050 838 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10027728 [exp] 96 / 2e-22 AT3G10050 787 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10022929 [exp] 94 / 3e-22 AT5G44120 340 / 9e-113 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024889 [exp] 93 / 1e-21 AT5G44120 407 / 1e-138 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021180 [exp] 50 / 4e-07 AT5G44120 377 / 1e-126 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118400 [exp] 96 / 1e-22 AT3G10050 869 / 0.0 L-O-methylthreonine resistant 1 (.1) Potri.005G224700 [exp] 43 / 0.0001 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020520 pacid=23172279 polypeptide=Lus10020520 locus=Lus10020520.g ID=Lus10020520.BGIv1.0 annot-version=v1.0 ATGAAATTTCATGATGTTGCTCCTTTCATTTTTTCTTTCTTTGGTGGAAAGAAATCAAATGAAAAATCACTCCCGAATCAAACAGAGGAAGGCGGATCCG GGATCGCCCTTACCGCCGATGTCCTTCTGGCCAGCGAGTTTACCATCGCGTTGTCCTTGGTCTTGAACGCCACCCACTCGAACCTCTCGCTCTGGGATCT CTTCACCACCGGGAAGTTCTGCGGCACCATCACCACCTGTCCTCCCTGCAACACTCCTTCAAACACCGAGTTCCCTTCCTCGTTCACGATCTGGACTCTG GCTTGTCCTCTGATCGCGTACACTATCCTGTCCGCTGAAGCTTACTGCAAATACTACGGGCTAAAGGGCGAAAACGTGGTGGCGATTACGATCGGAGCAA ACATGAATTTCGACAGACTCGGCCTGGTTTCGCAACTCGCATATTGGAGGCTGTTGTGGCTACATTCGTGCCGGAGAAATGGGGGAACTTCATGGAGTTC TATAAACTGTGTCAGCTTCAGTACGATGCTCGAGCTCGAGAAGCTGATAGACTGGATGAAATCGGCCAATCTCCACACCTTCAATCTCACTGATAATGAC CTTGTTGGTGGCCGGTCCAACGTTGAGAACGAAATCCTCTGCCGATTCATCATCCCCGAGAGGCCGGTGCTCTAG
AA sequence Show only first row Show all	>Lus10020520 pacid=23172279 polypeptide=Lus10020520 locus=Lus10020520.g ID=Lus10020520.BGIv1.0 annot-version=v1.0 MKFHDVAPFIFSFFGGKKSNEKSLPNQTEEGGSGIALTADVLLASEFTIALSLVLNATHSNLSLWDLFTTGKFCGTITTCPPCNTPSNTEFPSSFTIWTL ACPLIAYTILSAEAYCKYYGLKGENVVAITIGANMNFDRLGLVSQLAYWRLLWLHSCRRNGGTSWSSINCVSFSTMLELEKLIDWMKSANLHTFNLTDND LVGGRSNVENEILCRFIIPERPVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10020520 [exp]	0	1
AT2G48060			unknown protein		Lus10029972 [exp]	2.2	0.8213
AT5G59250			Major facilitator superfamily ...		Lus10040772 [exp]	3.0	0.8046
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10003827 [exp]	5.0	0.7872
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10026167 [exp]	6.6	0.8106
AT1G54730			Major facilitator superfamily ...		Lus10029971 [exp]	9.5	0.7752
AT5G04900		NOL	NYC1-like (.1)		Lus10034874 [exp]	18.0	0.8034
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	25.0	0.7738
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10012235 [exp]	25.1	0.7654
AT4G04750			Major facilitator superfamily ...		Lus10029965 [exp]	25.7	0.7778
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015103 [exp]	26.2	0.7433

Compare expression of checked genes

Lus10020520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.