Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08200 731 / 0 AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) AT2G27860 728 / 0 AXS1 UDP-D-apiose/UDP-D-xylose synthase 1 (.1) AT3G53520 116 / 1e-28 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT3G46440 113 / 3e-28 UXS5 UDP-XYL synthase 5 (.1.2) AT5G59290 112 / 7e-28 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT2G28760 112 / 8e-28 UXS6 UDP-XYL synthase 6 (.1.2.3) AT2G47650 113 / 1e-27 UXS4 UDP-xylose synthase 4 (.1.2) AT3G62830 108 / 8e-26 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G53500 70 / 7e-13 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT1G78570 57 / 1e-08 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005370 [exp] 802 / 0 AT1G08200 732 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Lus10040847 [exp] 119 / 3e-30 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10001707 [exp] 119 / 4e-30 AT2G28760 636 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005450 [exp] 117 / 1e-29 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005155 [exp] 117 / 1e-29 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10003605 [exp] 117 / 6e-29 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10030368 [exp] 116 / 1e-28 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006510 [exp] 105 / 6e-25 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10015038 [exp] 103 / 4e-24 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G189900 [exp] 739 / 0 AT1G08200 717 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.009G150600 [exp] 722 / 0 AT1G08200 736 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.001G237200 [exp] 118 / 5e-30 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.008G053100 [exp] 118 / 6e-30 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.010G207200 [exp] 116 / 3e-29 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.002G204400 [exp] 112 / 2e-27 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 112 / 3e-27 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G080500 [exp] 111 / 7e-27 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 109 / 3e-26 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G272700 [exp] 59 / 2e-09 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10020521 pacid=23172355 polypeptide=Lus10020521 locus=Lus10020521.g ID=Lus10020521.BGIv1.0 annot-version=v1.0 ATGGCGGTTAGGGTGGATCTGGACGGGAAGCCGATTAAGGCGATGACGATATGCATGATCGGCGCCGGAGGCTTCATCGGCTCGCACCTTTGCGAGAAGA TCCTTAACGAGACGCAGCACAAGATCTTGGCTCTCGACGTCTACAATGACAAGATCAAGCACCTCCTGGAAGGTGGCGACAGCAGCTTCCCTGAACGGAT TCAGTTCCATCGGATCAACATCAAGCACGACTCTCGCCTCGAAGGCCTCATCAAGATGTCAGATCTGACGATTAATCTGGCGGCGATCTGCACTCCTGCC GACTACAACACTCGTCCGTTGGATACTATTTACAGCAATTTCATCGATGCGCTCCCTGTGGCGAAGTACTGTTCTGAGAACAACAAGCGTTTGATTCACT TCTCCACTTGTGAAGTGTATGGGAAAACCATTGGAAGCTTTCTTCCCAAAGACAGTCCTCTTCGCGAGGATCCTTCCTACTACATTCTGAAAGAAGATAC ATCTCCATGCATTTTTGGCTCAATCGAGAAGCAGAGGTGGTCATATGCATGCGCCAAACAGTTGATTGAAAGGCTGATATACGCTGAGGGTGCTGAGAAT GGTCTTGAGTTCACCATCGTGAGGCCATTCAACTGGATTGGCCCCAGAATGGACTTCATTCCCGGCGTCGATGGCCCAAGTGAAGGAGTTCCCAGAGTTT TGGCATGCTTCAGCAATAATCTCTTGCGCCGTGAGCCACTCAAGCTCGTAGATGGTGGTGAATCCCAGAGGACCTTCATATACATCAAAGATGCCATTGA AGCTGTTCTGTTAATGATTGAAAATCCTGCCAGGGCTAACGGCCACATCTTCAATGTTGGCAACCCTCACAACGAAGTTACCGTCAGGCAGCTTGCTGAA ATGATGACAGAGATCTATTCCAAGGTTAGTGGGGAGGCTTCTCTGCAGTCACCAACAATCGATGTCAGCTCGAAGGAATTCTACGGAGAAGGATACGACG ACAGTGACAAGCGTATCCCCGATATGACAATCATCAACAAGCAACTCGGTTGGAACCCGAAGACTTCGTTGTGGGATTTGCTTGAGTCGACTCTCACGTA CCAGCACAGGACATATGCAGAGGCCATCAAAAAGGTGATAGCGAAGCCCACATCGAGCTGA
AA sequence Show only first row Show all	>Lus10020521 pacid=23172355 polypeptide=Lus10020521 locus=Lus10020521.g ID=Lus10020521.BGIv1.0 annot-version=v1.0 MAVRVDLDGKPIKAMTICMIGAGGFIGSHLCEKILNETQHKILALDVYNDKIKHLLEGGDSSFPERIQFHRINIKHDSRLEGLIKMSDLTINLAAICTPA DYNTRPLDTIYSNFIDALPVAKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLREDPSYYILKEDTSPCIFGSIEKQRWSYACAKQLIERLIYAEGAEN GLEFTIVRPFNWIGPRMDFIPGVDGPSEGVPRVLACFSNNLLRREPLKLVDGGESQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAE MMTEIYSKVSGEASLQSPTIDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKVIAKPTSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Lus10020521 [exp]	0	1
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Lus10005370 [exp]	1.0	0.9746
AT5G40150			Peroxidase superfamily protein...		Lus10039445 [exp]	2.4	0.9255
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10012344 [exp]	3.2	0.9197
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10017656 [exp]	3.2	0.8971
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10006391 [exp]	4.0	0.9017
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	4.5	0.9354
AT4G22900			Protein of unknown function (D...		Lus10001191 [exp]	5.5	0.9055
AT4G02320			Plant invertase/pectin methyle...		Lus10008203 [exp]	9.6	0.9217
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10038435 [exp]	10.9	0.9040
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10021832 [exp]	12.2	0.8939

Compare expression of checked genes

Lus10020521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.