Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27170 45 / 0.0001 transmembrane receptors;ATP binding (.1.2) AT3G44400 42 / 0.0006 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005373 [exp] 477 / 2e-160 AT5G36930 404 / 8e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020536 [exp] 249 / 1e-74 AT1G27170 392 / 8e-118 transmembrane receptors;ATP binding (.1.2) Lus10020537 [exp] 244 / 1e-72 AT1G27170 404 / 6e-121 transmembrane receptors;ATP binding (.1.2) Lus10020524 [exp] 243 / 2e-72 AT1G27170 395 / 9e-119 transmembrane receptors;ATP binding (.1.2) Lus10026961 [exp] 239 / 3e-71 AT5G36930 420 / 2e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020533 [exp] 192 / 2e-54 AT1G27170 405 / 1e-122 transmembrane receptors;ATP binding (.1.2) Lus10005375 [exp] 166 / 7e-49 AT1G56130 45 / 4e-05 Leucine-rich repeat transmembrane protein kinase (.1) Lus10020534 [exp] 151 / 2e-40 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10038533 [exp] 98 / 4e-22 AT1G27170 386 / 7e-114 transmembrane receptors;ATP binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G053200 [exp] 45 / 8e-05 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.015G043600 [exp] 44 / 0.0002 AT1G27170 1195 / 0.0 transmembrane receptors;ATP binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10020525 pacid=23172302 polypeptide=Lus10020525 locus=Lus10020525.g ID=Lus10020525.BGIv1.0 annot-version=v1.0 ATGTGTGCTTTCCTTATTCTTATACAGGTAGCACCTAATTTGAAAGTTGTGTCTCTGAAGGGATGCTACAACCTAAAAGAAGTTCCAGACCTGTCCAATT GCAGAGCTCTAGAGGTTCTAGACTCCAGAGAATGCCCGAAGATGCGCGGAGAGCTCGACATTCGAAACCTGACGAATCTCAAACTCCTCGGGATCTCCAA TACCAAGATATCCAAGATAAAAGGCGACATCGGAAGGTTAGAAAATCTCATACACCTCGATGCTAGCCACTCAAGTCTAATAAAAGTCCCCTCCGGAATT AGCAAGCTATCATCTCTCGAAATCTTGAAGCTCAAGTTAACCCCTCCCAACAAGTTGGAAATGACAGGAAAGTTTCCCGACAGCTTAAAGACCCTTACAA TCTCGTCTTCTTACCTCTCTGCTCTCCCGTCGTCTCTAACCTACCTCGAGAGTTGCTACTGCAAGGCTCTACCGAATCTCTCAAACGCCACAAATCTGTT GCAGCTTCATTTGAGAAACGTCGAGATACGTGAAGTTATCGGTCTGGGAGAGCTCAAGCTGCTGGAAAGTCTGGTGATCGAAAAAGCTCCGAAATTGAAT AATTTGGACGGTCTTGAGAATTTGTCTAGTCTCGAAGAATTGAAACTAGAAGGATGTCTGGTCCTGGCAAAATTACCGAGCCTTGCTGGTTTGACCCGAT TAGGGGTGCTCGAGATTGAGAACTGTCCAGTTCTGACTGGAATCCATGGTGCGGGAGAGCTTCACGATACCTTATTGGTTATAGAGGTTCGCGGGTGTTC GAGCTTAACAGGGTTTAAGGCACTTTGCTCCATGTTGAAGTTGGAGTCTCTGGTACTCATGGGTACTGAGTTAACCGATACGGTCCAGCCTTCACTGTCT TTGTTCACCAAAATCGAGAGGCTAGCTTTATGTAACATGTCGATAGTGCATTTCCCCGACCTCTCGAATCTCAAGAATCTGAGAGATTTATGGACTAAAT TCTGCTAA
AA sequence Show only first row Show all	>Lus10020525 pacid=23172302 polypeptide=Lus10020525 locus=Lus10020525.g ID=Lus10020525.BGIv1.0 annot-version=v1.0 MCAFLILIQVAPNLKVVSLKGCYNLKEVPDLSNCRALEVLDSRECPKMRGELDIRNLTNLKLLGISNTKISKIKGDIGRLENLIHLDASHSSLIKVPSGI SKLSSLEILKLKLTPPNKLEMTGKFPDSLKTLTISSSYLSALPSSLTYLESCYCKALPNLSNATNLLQLHLRNVEIREVIGLGELKLLESLVIEKAPKLN NLDGLENLSSLEELKLEGCLVLAKLPSLAGLTRLGVLEIENCPVLTGIHGAGELHDTLLVIEVRGCSSLTGFKALCSMLKLESLVLMGTELTDTVQPSLS LFTKIERLALCNMSIVHFPDLSNLKNLRDLWTKFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16950		RPP5	RECOGNITION OF PERONOSPORA PAR...		Lus10020525 [exp]	0	1
AT4G26530			Aldolase superfamily protein (...		Lus10032956 [exp]	2.0	0.9487
AT4G26530			Aldolase superfamily protein (...		Lus10005850 [exp]	2.8	0.9327
AT3G19320			Leucine-rich repeat (LRR) fami...		Lus10002828 [exp]	4.2	0.9191
AT5G55480		GPDL1, GDPDL4, ...	glycerophosphodiesterase-like ...		Lus10018042 [exp]	5.3	0.9191
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042242 [exp]	5.9	0.8948
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Lus10025163 [exp]	7.1	0.9108
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10010006 [exp]	7.9	0.8927
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10041319 [exp]	8.3	0.8790
AT4G26530			Aldolase superfamily protein (...		Lus10005849 [exp]	8.5	0.9044
AT5G35525			PLAC8 family protein (.1)		Lus10035039 [exp]	10.9	0.8829

Compare expression of checked genes

Lus10020525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.