Plant FIBer expression Database

Lus10020531 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72550 842 / 0 tRNA synthetase beta subunit family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009382
[exp]
1086 / 0 AT1G72550 832 / 0.0 tRNA synthetase beta subunit family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G070200
[exp]
915 / 0 AT1G72550 939 / 0.0 tRNA synthetase beta subunit family protein (.1.2)
Potri.013G068100
[exp]
899 / 0 AT1G72550 930 / 0.0 tRNA synthetase beta subunit family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0383 PheT-TilS PF03483 B3_4 B3/4 domain
CL0040 tRNA_synt_II PF01409 tRNA-synt_2d tRNA synthetases class II core domain (F)
CL0123 HTH PF03484 B5 tRNA synthetase B5 domain
Representative CDS sequence
>Lus10020531 pacid=23172340 polypeptide=Lus10020531 locus=Lus10020531.g ID=Lus10020531.BGIv1.0 annot-version=v1.0
ATGCCGACGGTGAGCGTGGGAAGGGACCGGCTCTTCGCCGCCATTGGAGAAACTTACACTCAACAGAAATTCGAGGAGCTCTGCTTCGATTTTGGAATCG
AGCTTGACGATGTGACTACTGAGAAGGCCATCATGAGGAAAGAGAAGCATTTGGAAGAAGAAGTGGATGATGATGAGGAAGTTATCTACAAAATTGAGGT
CGCTGCTAACAGATACGATTTACTTTGTCTCGAGGGTATTGCTCAAGCCCTGCGGGTGTTTATTAAGAAGGAAGAGACACCTGTATATACACTTTCTAAC
GTGAGCAAGGAGTCAATGTTAAGGATGCATGTGAAGAAAGAGACATCAGCAGTTCGGCCCTTTGTTGTTTGTGCTGTTCTGAGAAACATCACTTTTGACG
AAGCCAGTTATAATAGCTTCATTGATCTCCAAGACAAGCTTCATCAAAACATTTGCAGGCGGAGAACTCTTGTTGCAATTGGCACTCATGACCTGGACAC
GCTTCAAGCCCCATTCAGTTACGAGGCCCTGCCTCCAGAAAAGATAAACTTTGTACCACTGAAGCAGGGAAAAAATTTCAGAGCTGATGAACTGATGGAG
TTTTACAAGTCTGATCTGAAGCTGAAGAAGTTTCTGCATATAATCGAGGGCTCTCCTGTCTACCCTGTTATATATGATCAAAAAAGAACTGTCTTGTCTT
TACCTCCTATCATCAATGGTGCTCATTCTGCCATCACTTTAAAGACAAAGAACGTCTTCATAGAATGTACAGCCACTGATCTGACAAAGGCCAAGATTGT
ATTGAACACAATGGTGACAGCTTTCTCATCATATTGTCTGAAAAAGTATGAAGTGGAACCAGTTGAAGTAATATACGATGACGGAAAGTCTTTTGTATGC
CCCGACTTATCTGAATACAGTATGGATGGTCCTTTATCTTACATCACTGGCTTAATTGGAACTGATGAACTGAAGAAGGCAGATGAGGTCACTAGTCTGT
TAAACCGGATGCAGCTGCGTGCTGAGAGATGTCCATCGAATACTGAGGAGCAGAATATCAGAGTATCAGTACCTCCAACTAGGAGCGATATTCTTCACCC
TTGTGATGTTATGGAAGATGTTGCTATTGCATTTGGTTTCAATAACATTCCCAAGAGAAAGCTGCCATCTTTAAAGCCTCTGTCCTTGAATGAGTTTGAG
AAACTTATCAGAGTGGAGGTTGCAATGAATGGTTTCACAGAGATCGTGTCATGGATTTTGTGTTCTTACCGAGAGAATTTTTCCATGTTAAACCGGACTG
ATAACAAATCAACAGCAGTTATCATCGGGAATCCTCGTTCTTCTGATTTTGAGGTTGTGCGAACTAGCCTCATGCCTGGAGCACTGAAAGTCGTCATGCA
TAATAAAGATCATCCCAAGCCCATAAAGATATTTGAAGTTGGTAATGTAGCTCGGCTGGACGGAACAACAGATGTCGGTGCTGCAAATCGCCTGCATCTT
GGAGCTTTGTATTGCGGTACCAATTCAGGATTTGAGTTGATCCATTCCCTGGTAGACAGAGTAATGGAAGCGATGGGAACTGAATTCAAACCAGATGGTG
ATCACTCTGGGTATTGCATACAGCGAGCGGAAGAACCTGAGTTTCTGTCGGGCCGACAAGCTTCCATCATTTACAAAGGAAAGCGCATTGGCATCTTTGG
TATCGTCCACCCTCAGGTGTTGAGCAACTTTGACATCCCGGATCCATGTTCGTTCTTGGAAATGGACGTTGAGGCATTCTTGACAGGATGA
AA sequence
>Lus10020531 pacid=23172340 polypeptide=Lus10020531 locus=Lus10020531.g ID=Lus10020531.BGIv1.0 annot-version=v1.0
MPTVSVGRDRLFAAIGETYTQQKFEELCFDFGIELDDVTTEKAIMRKEKHLEEEVDDDEEVIYKIEVAANRYDLLCLEGIAQALRVFIKKEETPVYTLSN
VSKESMLRMHVKKETSAVRPFVVCAVLRNITFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQAPFSYEALPPEKINFVPLKQGKNFRADELME
FYKSDLKLKKFLHIIEGSPVYPVIYDQKRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTAFSSYCLKKYEVEPVEVIYDDGKSFVC
PDLSEYSMDGPLSYITGLIGTDELKKADEVTSLLNRMQLRAERCPSNTEEQNIRVSVPPTRSDILHPCDVMEDVAIAFGFNNIPKRKLPSLKPLSLNEFE
KLIRVEVAMNGFTEIVSWILCSYRENFSMLNRTDNKSTAVIIGNPRSSDFEVVRTSLMPGALKVVMHNKDHPKPIKIFEVGNVARLDGTTDVGAANRLHL
GALYCGTNSGFELIHSLVDRVMEAMGTEFKPDGDHSGYCIQRAEEPEFLSGRQASIIYKGKRIGIFGIVHPQVLSNFDIPDPCSFLEMDVEAFLTG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G72550 tRNA synthetase beta subunit f... Lus10020531
[exp]
0 1
AT4G19210 ABCE2, ATRLI2 ARABIDOPSIS THALIANA RNASE L I... Lus10033309
[exp]
4.4 0.8137
AT1G17690 NOF1 nucleolar factor 1, unknown pr... Lus10009882
[exp]
13.0 0.7770
AT3G13460 ECT2 evolutionarily conserved C-ter... Lus10020269
[exp]
16.2 0.7812
AT2G03640 Nuclear transport factor 2 (NT... Lus10026668
[exp]
22.6 0.7320
AT5G15610 Proteasome component (PCI) dom... Lus10013192
[exp]
22.8 0.7819
AT1G13160 ARM repeat superfamily protein... Lus10036950
[exp]
28.5 0.7756
AT1G77550 tubulin-tyrosine ligases;tubul... Lus10027620
[exp]
37.1 0.7893
AT1G10840 TIF3H1 translation initiation factor ... Lus10007054
[exp]
38.5 0.7347
AT3G02530 TCP-1/cpn60 chaperonin family ... Lus10033546
[exp]
46.0 0.7693
AT4G19210 ABCE2, ATRLI2 ARABIDOPSIS THALIANA RNASE L I... Lus10034771
[exp]
47.4 0.7430

Lus10020531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.