Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22760 621 / 0 PHD finger family protein (.1) AT5G35210 607 / 0 metalloendopeptidases;zinc ion binding;DNA binding (.1.2) AT5G12400 228 / 7e-60 DNA binding;zinc ion binding;DNA binding (.1) AT4G14920 63 / 2e-09 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36740 60 / 1e-08 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 60 / 1e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G05380 60 / 2e-08 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT5G44800 59 / 4e-08 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT3G01460 58 / 7e-08 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT3G14980 58 / 8e-08 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009383 [exp] 2970 / 0 AT5G22760 714 / 0.0 PHD finger family protein (.1) Lus10014918 [exp] 239 / 4e-63 AT5G12400 1062 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Lus10027346 [exp] 236 / 2e-62 AT5G12400 1029 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Lus10006110 [exp] 65 / 6e-10 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 65 / 7e-10 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10007741 [exp] 64 / 1e-09 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10018681 [exp] 62 / 4e-09 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10042602 [exp] 60 / 2e-08 AT5G36740 607 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10022053 [exp] 59 / 4e-08 AT5G36740 617 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G189600 [exp] 1501 / 0 AT5G22760 879 / 0.0 PHD finger family protein (.1) Potri.009G150200 [exp] 1477 / 0 AT5G22760 855 / 0.0 PHD finger family protein (.1) Potri.009G049100 [exp] 484 / 6e-142 AT5G12400 1084 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Potri.001G254300 [exp] 471 / 8e-138 AT5G12400 1020 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Potri.008G152600 [exp] 66 / 2e-10 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.010G087700 [exp] 66 / 2e-10 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G392801 [exp] 65 / 6e-10 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.017G072460 [exp] 61 / 1e-08 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.005G211100 [exp] 58 / 7e-08 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.009G072600 [exp] 56 / 3e-07 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF02791 [flax] [poplar] DDT DDT domain
Representative CDS sequence Show only first row Show all	>Lus10020532 pacid=23172262 polypeptide=Lus10020532 locus=Lus10020532.g ID=Lus10020532.BGIv1.0 annot-version=v1.0 ATGGAGTCTGCTGATGTGAAGAAGAGAGGTAGAGGAAGGCCGAAGAAGCGAAGGCGAGCTGAGGAGGTGAAGAATGAGAGTAGTGATAAGAATATTGGAA GTGCTTTGAAGAAGAGGGTTCTGGAGATATGGTCGAAGCCACTTGTGGGGAGGTATGTGATGAAGGAGTTTGAGGGAAATGGGGTTTTCTTGGGGAAGAT TGTGCAGTATGATACTGGGTTGTATAGAGTTGAGTATGAAGATGGGGATTGTGAAGATTTGGATAGTGGTGAACTTCGTAGTATCATTTTAGGGGACAAT GAGGTTGATGATGGGTTGGTTGGGAGGATGCGGAGGTTGGATGAGTTGCTGGTTAAGAAGAACGAGGCTCGCAAGGAATTGGATAAGCAGCGAATGGAGA AGGTGAAGGATGAAGTGGCTGTTATTGATGAAGCACCTGGGGAGGTGAGTGGTGTATTGAGAGATGGGAATGATGGTGGAGAGGGAGAAGATGGGGATTC GTCAAGTGATTCATGTGATTATGCACAGGGAAGGGACTTGGGTGTAGAGGAAGAGGCCCCTCTTATACCACCTCCACAGTTTCCACCTTCTTCGGGGAAT GTAGGTGTGCAGGAGGAGTATGTCTCACATCTGTTGTCGGTCTATGCATTCTTGAGGTCGTTCAATGTACAGCTATTTTTGAGTCCGTTTTCGCTGGATG AACTAGTTGGGGCGGTTAACTGCCGTGTGCAGAACACATTGTTGGATTCGATCCATGTTGTTTTGTTGCGTGCAATAAGACGTCGTCTCGAGACACTCTC TGCTGACGGCGTGGAGCTTGCATCAAAGTGCTTGAGGAGCGTAGACTGGAATTTGCTTGATTTGTTGACGTGGCCAGTTTTCTTGGTAAACTATTTTACT GTAATGGGGTATGCAAAGGGACCTGAATGGAAAGGTTTCCATGATGATTTTTTGCAAAGGGAGTATTATTTGTTAACAGCGGGTAGGAAATTGATGATAC TACAAATCCTGTGTGATGATGTATTGGACTCTGCAGAGATGAGATCAGAAGTTGATATTCGTGAAGAATCAGAATTTGGGATAGATCCTGATTCAGCTGT AAATGGTTTTGTTGAAAGCGGACCTAGAAAGTTGCACCCCAGATTTTCTAAGACTTCTGCTAGTAAAGACAGGGGGGTCGTAGAAATCACTGCAGAAAAC CGTGGGACTAAGTCATCTGAAGGTCCAAACTGTTCGGGCGATCCAAATGTTCCTGTTGATAACTCTGATGAGAATAGCGATGACTGTAGATTGTGTGGCA TGGATGGAACGTTGCTTTGTTGTGATGGTTGTCCAGCAGCATACCATTCAAGATGTATAGGTGTTGTTAAAATGTATATACCAGATGGGCCATGGTACTG TCCAGAGTGTATCATAAATCGAATGGGGCCTTGTATCGCAATGGGAACGTCACTTAAAGGAGCAGAAGTTTTTGGTATTGATGCATACCAGCATGTCTTC ATGGGTACCTGCGATCACTTATTGGTGCTCAGGGCTTTTGCTGACAAACATCAGTGTCTCAGATATTATGGTCAGAAAGACATCCCAAATGTCCTGCAAT CTCTTTGTGCATCTGAGCAACACAGACCAATATACTCAGAGATATGCAAGTTGATTGCACAATACTGGGATATTCCTTCAATCCCCTTATATGCCGCTGA GGTGATGGAGAAGGATTTAAAACCTGCATTGGTGAAGGAAAATGTAAATATTTCAACAGTGTCAACTCCTGCATGGGAGATAACTCAGGGAGTTCCTGAT GTTACTAAGGCAGATAATCCACTTAGTTCAAATGGGAAGACTTCAGAGAATATCTCGGTCTCATGTGTTGAGACCTTGGGTCAGACAACTACTCCATCTG AAATGCGTGGCACCTTGAACAGTATTGATACCACAAGAACTGTGGACTTGGATCGGGCGAACACTAAGCCATCCGAGCAAAATAAAGTGAACGGTACCAT TTCAGGCACACAAGCTGATCAATCAGTTTTGACACACCAAAGTACTACGTGCAATTCGGCAAATAGTCACAGTAGCCATGTTGGTCTAGTGAGTGGCACT GCTTTACCTGCCATTATGTCCTCACAAAGAAAAGATGCCAGTCTTGCAGGCTCTGTGAAGGTGTCTAGATATTTGGGTCAGAATCCTTTATATTTGGGAT CTTCGTTTAAACCTAAAGCCTACATAAATCACTATGCACATGGCGACTTTTCAGCATCTGCTGCTGCTGCTTTGGCTGTTCTTTCTTCCGAGGACACCCG GGGTCCAGGTGCACATAGGTCAAATAACGCTAAGAAAGCTAGTTATGATATTATAATTCAGACGAAAGCATTTTCCAAAGTAGCCTCACGTTTCTTCTGG CCATCTTCTGAAAAGAAACTTATTGAGGTGCCAAGAGAGAGGTGTGGTTGGTGTCAATCGTGTAAGGTTATCACTAGCAGCAAGAGGGGGTGCATGTTAA ATTCAGCTGGATTGATTGCAACTAAAGGCACTCTAAAAATTATTGGCAGCTTGCGCCCGACACTTACTGGGGATGGAAGTCTTCCTAGTATCTCAACTTA CATCATGTACGTTGGAGTAATGTTATCCGGGCTCACAATTGGCCCCTTCCTCAGTGCAAGTTACAAAAAGCAATGGCTCAAGCGAGTTGAAGATGCTTCG GGTTGCAGTACATTAAAAGGTCTGCTGCTAGAGCTTGAAGAAAATATCCGCCGTATTGCTCTTTCAGGGGACTGGTTTAAGGCTGTGGATAATTGGGTGA CTGGATCATTTATAACTGAAACTGCTGCTACTGAGACTCGCGGTGCCCGAAGACGCGGACCAACTGGAAAACGGCATAAGAAACCATCTGTGTCATCAGA CAACAATGCTGATAGTTCTGATGGTAGGAGTTTTGTCTGGTGGCGAGGTGGAACAGTATTGAAGCATGTCTTTCACAATGCAGTTTTGCCCAAGTCGATG ATGAGAAAGGTGGCCCGGCAAGGTGGCTCAAGAAAAATTTCAGGTCTCTGTTACACTGATGATTCTGAGATCCCCAGAAAAACAAGGCAACTGGCTTGGA GAACTGCTGTTGAGGACTGTAATAACTTATCTCAGTTGGCACTTCAGGTAAGGTATCTGGATGTGCATGTCAGATGGAGTGACCTTGTCCGGCAAGAATT GAATCCTCAGGATAGTAAAGCTTCAGAGACAGAAGCATCAGTTTTCAGGAATGCAACTATATCAGACAAGGAAGCCGAAGAAAAAAACATCATCTATGCA GTTGCTTTTGGGAAACAGAAGCATCTGCCTTCCCGGATCATGAAGAATGTGATTCGTGTAGAAGAAAAGGAAGGTGCTGATAATAAGTACTGGTTTTCTG AAGCCAACGTACCATTATATTTGATTAAAGAGTATGAAGCAAAGAAAGAGGTTGTCGTACCGCTAGCTAATAAGTCAAACAACACACTGTCTGAGTTGCA AAGAAAACAACTGAAAGCTTCTCGTAGAGAGATATTCTCATATCTCGTGTGTCGGAGAGATGGCCTAGAAAAGTGTTCATGTGCTTCGTGTCAGCGTGAT GTTCGTATAAGGGGAACTGTTGAATGCGGTGCTTGCCACGGTTACTGTCACAAGGAATGTACCGTGCGGTCAACAACTTATCGAAATAATGTAGTTGTGC TCTTGCTCATCTGCAACCGGTGTCGTAACCCCAAAGCTGCTTATATGCAATACAGCAATAAGTCTCCAACCACTCCACTCCCCTCAAGAGTGCCAGAGTT GCATAAAACGTCTATGTTCAGCCAGGCTACGAAACCGAATATCCAAAACCAGTTATTGGTGGCTGGTAAACCAAATATCACGTTTTCTCAGATGAACCAA GATAGTGGAGCTAAAATAAAGGTGCAGCAGCATAATCAGTCATTGGTATCTGTCAAGATCGAACAACCTGCTCCTTCTCCAGCTTCGGCACCAGCTTCTG CTCCAGCTTCGGCACCGAAGCATAGCAAAATAACCAGTTGGGGTATTATATGGAAGAAGAACCCTGAAGATACAGGTGTTGATTTCCGACGCAAGAACAT TATCCTAAAAGGCTCTCCAGATGGGAACAGGATAAGGCCTATGTGTGAGCAGTGCAAAAAAGATTATGATCCTAATCTGATGTACATTTTCTGCGAATCC TGCGCTAAATGGTTGCATGCCGACGCTGTTGAACTGGATGAATCGAGAGTTGCCGAAGTTATTGGATTCAAGTGCTGTAGATGTCGGCGAATAAGAAGAC ACCGGTGCCCTTATAGGGAGGAGGATCCCGTAACTAGTAGTAAGAAATCGGAGAAAAAGCTGTCGCGAAAGAAACTTGTGAAGCAAGAAAGCCAAACTAT GGACTATGATCCAGCCACTCCAACGTTCCTCCCCGTCCAGCCTCCGGTGGTACCAAACGACGATCCGCTTCTTTCAAACATGTTGAACGTCGAGCAAATT ACACCGAAGCAAGAACTCGGCCCAGTGGAGGATTCTAATGGACAGTGGCCTAGGAAACTGCCTGTAAGAAGGCAAACGAAGAATCAGGAAGGGGAAACCG ATTTTCATTATCAGCCGCCTGAGTCGTCTTCTCTTCTGCCTGAAACGAGCAGCTTCATGACTGTTCCTACCGACCAGGAGTATGACGTCACTAGTATAGA CTGGGACGGTTTCGGCAATGGTGCTGCCGATGGCGAGATGCTGATGGGAAATGATGAAGGTTTCAACTTCGAGGACATGGAGTTCGAGCCCCAGACGTAT TTCTCCTTCACCGAGCTTCTTGAGGAGGATGAGGCTAACCCGGATTTTCCAGGCCAACAGCCCGGTCCAGCAACAGAAGCTTTCCCAGATGTAGCACTCA CGGGATGGAACGAGTACGAACCTGTCCAAACCCCGGGTGGTGAAATTTTTATCGACCCGGCTCGGTGCCAGTACTGCTCGAAATCGGATCCTCCCCCGGA GCTGTGTTGCGAAATATGCAGGTTGATCATGCACAATGTCTGTGCTTTTCAGGTTGATCTTCCGCCTTGTGAAGGTAATTGGAGGTGTGGAGGTTGTAGA GAATGGCAGTAA
AA sequence Show only first row Show all	>Lus10020532 pacid=23172262 polypeptide=Lus10020532 locus=Lus10020532.g ID=Lus10020532.BGIv1.0 annot-version=v1.0 MESADVKKRGRGRPKKRRRAEEVKNESSDKNIGSALKKRVLEIWSKPLVGRYVMKEFEGNGVFLGKIVQYDTGLYRVEYEDGDCEDLDSGELRSIILGDN EVDDGLVGRMRRLDELLVKKNEARKELDKQRMEKVKDEVAVIDEAPGEVSGVLRDGNDGGEGEDGDSSSDSCDYAQGRDLGVEEEAPLIPPPQFPPSSGN VGVQEEYVSHLLSVYAFLRSFNVQLFLSPFSLDELVGAVNCRVQNTLLDSIHVVLLRAIRRRLETLSADGVELASKCLRSVDWNLLDLLTWPVFLVNYFT VMGYAKGPEWKGFHDDFLQREYYLLTAGRKLMILQILCDDVLDSAEMRSEVDIREESEFGIDPDSAVNGFVESGPRKLHPRFSKTSASKDRGVVEITAEN RGTKSSEGPNCSGDPNVPVDNSDENSDDCRLCGMDGTLLCCDGCPAAYHSRCIGVVKMYIPDGPWYCPECIINRMGPCIAMGTSLKGAEVFGIDAYQHVF MGTCDHLLVLRAFADKHQCLRYYGQKDIPNVLQSLCASEQHRPIYSEICKLIAQYWDIPSIPLYAAEVMEKDLKPALVKENVNISTVSTPAWEITQGVPD VTKADNPLSSNGKTSENISVSCVETLGQTTTPSEMRGTLNSIDTTRTVDLDRANTKPSEQNKVNGTISGTQADQSVLTHQSTTCNSANSHSSHVGLVSGT ALPAIMSSQRKDASLAGSVKVSRYLGQNPLYLGSSFKPKAYINHYAHGDFSASAAAALAVLSSEDTRGPGAHRSNNAKKASYDIIIQTKAFSKVASRFFW PSSEKKLIEVPRERCGWCQSCKVITSSKRGCMLNSAGLIATKGTLKIIGSLRPTLTGDGSLPSISTYIMYVGVMLSGLTIGPFLSASYKKQWLKRVEDAS GCSTLKGLLLELEENIRRIALSGDWFKAVDNWVTGSFITETAATETRGARRRGPTGKRHKKPSVSSDNNADSSDGRSFVWWRGGTVLKHVFHNAVLPKSM MRKVARQGGSRKISGLCYTDDSEIPRKTRQLAWRTAVEDCNNLSQLALQVRYLDVHVRWSDLVRQELNPQDSKASETEASVFRNATISDKEAEEKNIIYA VAFGKQKHLPSRIMKNVIRVEEKEGADNKYWFSEANVPLYLIKEYEAKKEVVVPLANKSNNTLSELQRKQLKASRREIFSYLVCRRDGLEKCSCASCQRD VRIRGTVECGACHGYCHKECTVRSTTYRNNVVVLLLICNRCRNPKAAYMQYSNKSPTTPLPSRVPELHKTSMFSQATKPNIQNQLLVAGKPNITFSQMNQ DSGAKIKVQQHNQSLVSVKIEQPAPSPASAPASAPASAPKHSKITSWGIIWKKNPEDTGVDFRRKNIILKGSPDGNRIRPMCEQCKKDYDPNLMYIFCES CAKWLHADAVELDESRVAEVIGFKCCRCRRIRRHRCPYREEDPVTSSKKSEKKLSRKKLVKQESQTMDYDPATPTFLPVQPPVVPNDDPLLSNMLNVEQI TPKQELGPVEDSNGQWPRKLPVRRQTKNQEGETDFHYQPPESSSLLPETSSFMTVPTDQEYDVTSIDWDGFGNGAADGEMLMGNDEGFNFEDMEFEPQTY FSFTELLEEDEANPDFPGQQPGPATEAFPDVALTGWNEYEPVQTPGGEIFIDPARCQYCSKSDPPPELCCEICRLIMHNVCAFQVDLPPCEGNWRCGGCR EWQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22760			PHD finger family protein (.1)		Lus10020532 [exp]	0	1
AT5G22760			PHD finger family protein (.1)		Lus10009383 [exp]	1.0	0.9750
AT4G32620			Enhancer of polycomb-like tran...		Lus10041252 [exp]	2.0	0.9548
AT1G27850			unknown protein		Lus10006433 [exp]	2.8	0.9532
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10028403 [exp]	3.0	0.9533
AT4G32620			Enhancer of polycomb-like tran...		Lus10021959 [exp]	4.5	0.9502
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001744 [exp]	6.0	0.9399
AT2G25320			TRAF-like family protein (.1)		Lus10001490 [exp]	7.5	0.9359
AT3G61690			nucleotidyltransferases (.1)		Lus10004018 [exp]	8.1	0.9419
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	8.4	0.9391
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10041322 [exp]	10.9	0.9413

Compare expression of checked genes

Lus10020532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.