Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61760 355 / 3e-123 ATIPK2BETA ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1) AT5G07370 352 / 2e-122 ATIPK2A, IPK2a inositol polyphosphate kinase 2 alpha (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009385 [exp] 618 / 0 AT5G61760 350 / 8e-122 ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1) Lus10020534 [exp] 430 / 5e-142 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10009397 [exp] 158 / 8e-49 AT5G07370 96 / 3e-25 inositol polyphosphate kinase 2 alpha (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G109500 [exp] 437 / 2e-155 AT5G61760 394 / 2e-138 ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1) Potri.012G111400 [exp] 424 / 2e-150 AT5G61760 404 / 1e-142 ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03770 [flax] [poplar] IPK Inositol polyphosphate kinase
Representative CDS sequence Show only first row Show all	>Lus10020535 pacid=23172287 polypeptide=Lus10020535 locus=Lus10020535.g ID=Lus10020535.BGIv1.0 annot-version=v1.0 ATGTTCAAAGTTCCGGAACATCAGGTTGCTGGACATCAAGCCATCAACGGCCTCCTCGGTCCTCTTGTAGACGATTCAGGGCGATTCTACAAGCCACTTC AGGGCGATGAGCGTGGGGCAACAGAGATGGCATTCTACACATCGTTTTCTGCTCACAAAACAATTCCACAACACGTCCGGAGGTTTTTCCCGGCCTTCCA TGGCACTCAAAGTATAGAGGCTTCTGATGGATCTGGCCTCCACCCGCACCTCATCTTAGAAGATCTCACGTCGACTCGGTTGCATCCATGTGTCATGGAC ATCAAGATTGGTTCCAGGACATGGTACCCCGAGGCTTCTCAAGCCTACATCGAGAAATGCCTGAAGAAGGATGTGGAATCAAGCAGTCCCTTGCTCGGGT TTAGGATATCCGGATTGCAGGTTTACGGTAACGACAAAGAATCATCTGAGGTGGTCTTGAAGCCTGAGAGGAAGCTTCTCCAGAATCTTACTGCTGATGA AGTTAGGCTGGTGCTTAAACGGTTTGTTTCCTCCAACCCGAAGTCGGACCAACCGGATTGTTCGTTTGCAGCGGTCGTTTACGGTGGTTCGAATGGGATC TTGGCTCAGTTGCTGGAGCTGAAGGCGTGGTTTGAGGATCAGACCATCTATCATTTCAACTCTTGTTCTGTTCTTATGCTGTATGAGAAGGAGAAGACGA AGATGGTGAATGAAGGAGGAGAAGAGAGTTTGGGTGGTGCTGCGGTGAAGCTCATCGATTTTGCTCATGTGACGGAGGGAAATGGCGTTATCGATCACAA CTTTCTTGGAGGGCTCTGCTCATTGATAAAGTTCATTTCCGAGATCCTCACCGGTCCGGATGAGAATTCTCCAAAGTCATGCCTGCAAGATGGTGCTGCA GAATCAAATCATGTTCTAGCTTGA
AA sequence Show only first row Show all	>Lus10020535 pacid=23172287 polypeptide=Lus10020535 locus=Lus10020535.g ID=Lus10020535.BGIv1.0 annot-version=v1.0 MFKVPEHQVAGHQAINGLLGPLVDDSGRFYKPLQGDERGATEMAFYTSFSAHKTIPQHVRRFFPAFHGTQSIEASDGSGLHPHLILEDLTSTRLHPCVMD IKIGSRTWYPEASQAYIEKCLKKDVESSSPLLGFRISGLQVYGNDKESSEVVLKPERKLLQNLTADEVRLVLKRFVSSNPKSDQPDCSFAAVVYGGSNGI LAQLLELKAWFEDQTIYHFNSCSVLMLYEKEKTKMVNEGGEESLGGAAVKLIDFAHVTEGNGVIDHNFLGGLCSLIKFISEILTGPDENSPKSCLQDGAA ESNHVLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	0	1
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030649 [exp]	1.0	0.9094
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10043022 [exp]	2.0	0.8974
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10011001 [exp]	2.8	0.9065
AT3G61700			Plant protein 1589 of unknown ...		Lus10004016 [exp]	3.0	0.9041
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10029126 [exp]	3.9	0.8929
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10013692 [exp]	5.2	0.8865
AT5G45850			Protein of unknown function (D...		Lus10015280 [exp]	5.7	0.8866
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10005556 [exp]	6.0	0.8843
AT5G59020			Protein of unknown function (D...		Lus10016455 [exp]	6.2	0.8785
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10040177 [exp]	6.5	0.8903

Compare expression of checked genes

Lus10020535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.