Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04810 46 / 5e-05 Protein of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011573 [exp] 232 / 2e-70 ND / Lus10003252 [exp] 124 / 2e-33 ND / Lus10035601 [exp] 122 / 6e-29 AT2G36310 536 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10035508 [exp] 99 / 2e-22 ND / Lus10022686 [exp] 95 / 2e-21 ND / Lus10019251 [exp] 90 / 1e-19 ND / Lus10027790 [exp] 69 / 2e-12 AT2G38180 194 / 1e-59 SGNH hydrolase-type esterase superfamily protein (.1) Lus10005052 [exp] 43 / 0.0003 AT4G27290 87 / 3e-19 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G134900 [exp] 59 / 5e-09 AT4G17565 99 / 8e-23 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G014500 [exp] 47 / 2e-05 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.003G127700 [exp] 42 / 0.0007 AT5G55150 56 / 2e-08 Protein of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Lus10020538 pacid=23172371 polypeptide=Lus10020538 locus=Lus10020538.g ID=Lus10020538.BGIv1.0 annot-version=v1.0 ATGAGTTATGCTGCGGCGTACGAGCTCCCGGAGGAGATAGAAGAGAAGATTGCGAAGGAGCACTTGGCGAGCTTTAGTCAACTGGTTGCCTTCTCTGGAG TATGCAGATCATGGAACTCCATTGCCAAAGAGCACTACTACAACAATCTCCGCTCCTCTCCAGGTATTCTCGTATCGAAAACATCCTGCACCGTAAAAAA CTGCGACTATTACCAACACGGTTACACAGAGGATTATTATTGCGATCTTACTATTCTCCACCATCAGTTCCAACCCATATCCACAATTTTCAACAATATT GTGCCACCTCATCCTCCTCCTCTACGACTCACGTGGTCCCCACAGAGGATCCTGCTGCAGGGGGGACCAACACATAAGCCGTCGGTTTTTGCTGACCTAG AAAAGTACCACTGCATAGCTTCCAAAGGTGGGTGGTTGGTCCTTCTCCAACATTGCTACCCGGTTCGCTTTTTCCTCTTCAATCCGATCACCGGAGCCTC CATCCTACTCCCTCCTCTCCAAACAGATGACGGATACTTATCCAGCCACCACTTTGACCATGTCATCCTCTCTTCTTCCCCGGGCGATGATCACGAAGAT TGTTATCTCATTGTTTTGTTCCACCTCGACCGTACCCCACAGGTCACCTGGTGCAAGGTGATCAGTACTGGCGGCGGTTGGAAATATACTACCTGTTATA GTGATTCCAAGTTGTTCAACTTCGTACAGTGTGCCTGCTACATCGAAGGAAAACTCTATGTCGTGGACCACATCAACAAGTGTGTCGTCGTGATTGATAA CCTCATTAATGTAACAGACAAGAAGGAGGATCCTCCTACGGTGAGGTCGTTCCCCTTCTCTTTCGACATGGCATTGCCTGATGAAGTCCCATACGTTCCA AGCCGGATTTCGTACCACGCGACGGATCTCAATCGCCAGCTAATCCTGGTCCTCCGGGATCGTTTCGAAGGAGGAAATCTCCACGTGTACAAGCTAGTTG AAGAGGACCCTTGTAATAAGTACTGGGAACAAGTCCGGAGTTTGGATGGACATGCTGTGTTCGTCGGGACTCATCAGTCCTTTTCCGTCCTGGTTAACAA AAATAGTAGTATCAGGAGCGACTCCGTTTACTATTTGGAAAACAGTTGTGGCCAATGTGAGTTGGACGATTCTCACGAGCTCTATACATATTGGTATCGT CGCAGTCGTAACGAGCATTGGGGCGCCTGTGGCATCTTCAGCCTTGCAGATGGAAAGCTAGTCGAGCAATCTCGTCTTCCCACCGACAGTTATCAAGACT ATAGGTGGTTCCTCCCGATGCCATGGGACATTGCTTACAATAATAAGAAGAAAATACCTTTGAAACCAAAGGAGATTGATGATCATAAGAAGAAAATACA TCGGAAACCAAAGGAAATCGATGGCAATGGCTTCCAGCTACCTTCTAACTCCAAGGTTACCCGCCGTAATCGTTTGCGCCCGCAACAACTTGCTAGCAAT CGAATTATTCCCTGTCACAATAGTTTCGAGGCTCTAGCATTAGTTGATTAG
AA sequence Show only first row Show all	>Lus10020538 pacid=23172371 polypeptide=Lus10020538 locus=Lus10020538.g ID=Lus10020538.BGIv1.0 annot-version=v1.0 MSYAAAYELPEEIEEKIAKEHLASFSQLVAFSGVCRSWNSIAKEHYYNNLRSSPGILVSKTSCTVKNCDYYQHGYTEDYYCDLTILHHQFQPISTIFNNI VPPHPPPLRLTWSPQRILLQGGPTHKPSVFADLEKYHCIASKGGWLVLLQHCYPVRFFLFNPITGASILLPPLQTDDGYLSSHHFDHVILSSSPGDDHED CYLIVLFHLDRTPQVTWCKVISTGGGWKYTTCYSDSKLFNFVQCACYIEGKLYVVDHINKCVVVIDNLINVTDKKEDPPTVRSFPFSFDMALPDEVPYVP SRISYHATDLNRQLILVLRDRFEGGNLHVYKLVEEDPCNKYWEQVRSLDGHAVFVGTHQSFSVLVNKNSSIRSDSVYYLENSCGQCELDDSHELYTYWYR RSRNEHWGACGIFSLADGKLVEQSRLPTDSYQDYRWFLPMPWDIAYNNKKKIPLKPKEIDDHKKKIHRKPKEIDGNGFQLPSNSKVTRRNRLRPQQLASN RIIPCHNSFEALALVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	0	1
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	1.7	0.9979
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	2.4	0.9979
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	3.0	0.9979
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	4.0	0.9941
AT4G25490	AP2_ERF	DREB1B, CBF1, A...	DRE BINDING PROTEIN 1B, C-repe...		Lus10027414 [exp]	4.4	0.8571
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	4.5	0.9687
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	4.9	0.9669
AT5G09360		LAC14	laccase 14 (.1)		Lus10026812 [exp]	5.3	0.9554
AT3G14470			NB-ARC domain-containing disea...		Lus10032781 [exp]	5.7	0.9392
AT4G27290			S-locus lectin protein kinase ...		Lus10034815 [exp]	6.0	0.9078

Compare expression of checked genes

Lus10020538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.