Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22740 598 / 0 ATCSLA2, ATCSLA02 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) AT5G03760 539 / 0 ATCSLA9, RAT4, CSLA9, ATCSLA09 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT4G13410 487 / 4e-170 ATCSLA15 CELLULOSE SYNTHASE LIKE A15, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G23480 478 / 2e-166 ATCSLA3, ATCSLA03 cellulose synthase-like A3 (.1.2.3) AT2G35650 465 / 3e-161 ATCSLA7, CSLA7, ATCSLA07 CELLULOSE SYNTHASE LIKE A7, cellulose synthase like (.1) AT1G24070 462 / 4e-160 ATCSLA10 CELLULOSE SYNTHASE LIKE A10, cellulose synthase-like A10 (.1) AT5G16190 430 / 5e-149 ATCSLA11 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A11, cellulose synthase like A11 (.1) AT3G56000 402 / 6e-137 ATCSLA14 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A14, cellulose synthase like A14 (.1) AT4G16590 356 / 1e-120 ATCSLA1, ATCSLA01 CELLULOSE SYNTHASE-LIKE A1, cellulose synthase-like A01 (.1) AT3G28180 323 / 1e-104 ATCSLC4, CSLC4, ATCSLC04 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009387 [exp] 708 / 0 AT5G22740 892 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Lus10008646 [exp] 551 / 0 AT5G03760 890 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10035580 [exp] 465 / 3e-162 AT5G03760 805 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10007715 [exp] 323 / 7e-105 AT4G07960 1010 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10018651 [exp] 322 / 1e-104 AT4G07960 978 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10025886 [exp] 317 / 1e-101 AT3G07330 994 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10038217 [exp] 310 / 3e-101 AT3G07330 821 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10020120 [exp] 313 / 4e-101 AT4G31590 1012 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10026923 [exp] 313 / 3e-100 AT4G31590 1078 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G149700 [exp] 622 / 0 AT5G22740 910 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Potri.004G189000 [exp] 605 / 0 AT5G22740 927 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Potri.006G116900 [exp] 564 / 0 AT5G03760 928 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G234100 [exp] 548 / 0 AT5G03760 870 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G026400 [exp] 520 / 0 AT5G03760 854 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G114200 [exp] 316 / 2e-101 AT4G07960 1031 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.018G009300 [exp] 313 / 2e-100 AT4G31590 1077 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.005G146900 [exp] 310 / 3e-99 AT4G07960 1050 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.006G270900 [exp] 309 / 6e-99 AT4G31590 1085 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.002G248400 [exp] 306 / 1e-97 AT3G07330 957 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00535 [flax] [poplar] Glycos_transf_2 Glycosyl transferase family 2
Representative CDS sequence Show only first row Show all	>Lus10020539 pacid=23172305 polypeptide=Lus10020539 locus=Lus10020539.g ID=Lus10020539.BGIv1.0 annot-version=v1.0 ATGGCGCAAGATTCACAGAGGATAATGATACCGGAGGCGCTTCAGCTGTCGCGGGACGACATTCTGGTCCAGTTCTCGCTAATGTGGGAGTTCATCAAGG CGCCGCTGATCGTGCCGCTGCTTAGATTCGGGGTCGTGGTATGTCTAATCATGTCGCTGATGCTCTTCTGCGAGAGGGTGTACATGGGGATCGTCATCGT AATGGTGAAGCTCTTCTTCAAGAAGCCGGATGAGCGGTACAATTGGCGGCCGTTGGAAGAGGAAGAGGATATGGAGTCCGGTAGTGGGTCTAGCTTTCCG TCGGTGCTGATACAAATCCCCATGTTTAACGAGCGCGAGGTGTACAAGCTCTCGATTGGCGCGGCCGCGAATCTTTCTTGGCCTACGGAAAGGCTTGTGA TCCAAGTTCTCGACGACTCCACTGATCCAGAAATCAAGCAAATGGTGGAGGTGGAATGCCAGAGGTGGGCGAGCAAAGGGATAAACATCCGGTACCAAAT CCGGGAAAATCGGGTCGGGTACAAGGCCGGAGCACTGAAAGAAGGGCTGAAACGGAGCTACGCTAAACACTGCGAGTACGTCGCCATCTTCGACGCCGAT TTCCAGCCGGAGCCGGATTACCTCCGCCGTGCTATTCCATTTCTGGTTCAGAACTCCGACATTGCCCTCGTTCAAGGCAGATGGCGATTCGTTAATTCCA ACGAGTGTCTGGTGACAAGGATGCAAGAGATGTCACTAGATTACCATTTCACAGTGGAGCAAGAAGTCGGTTCTGCCACCCATGCCTTCTTCGGCTTCAA TGGGACTGCTGGAGTATGGAGAATTGCCGCAATCAATGAGGCTGGTGGGTGGAAAGATAGAACCACCGTTGAGGATATGGATCTTGCTGTCAGGGCCAGC CTTCGTGGCTGGAAGTTTGTTTACCTTGGCGACCTCCAGGTGAAGAGTGAACTACCTAGTACTTTCAAGGCCTTCAGGTTCCAGCAACATAGGTGGTCCT GTGGCCCTGCCAATCTCTTCAGGAAAATGGTCATGGAGATTGTCCGAAACAAGAAAGTGAGGTTCTGGAAGAAAGTGTTGAACAAGATAGAGCTGGGATT CGCACTGTTCCTCTTCATATGTGGCTGCTATGACTATGCCCATGGGAAGAACAACTACTTTGTGTACCTATGGCTTCAAACCGTCACCTTCTTCATAGCT GGAGTTGGCTACATTGGCACAATCATATAA
AA sequence Show only first row Show all	>Lus10020539 pacid=23172305 polypeptide=Lus10020539 locus=Lus10020539.g ID=Lus10020539.BGIv1.0 annot-version=v1.0 MAQDSQRIMIPEALQLSRDDILVQFSLMWEFIKAPLIVPLLRFGVVVCLIMSLMLFCERVYMGIVIVMVKLFFKKPDERYNWRPLEEEEDMESGSGSSFP SVLIQIPMFNEREVYKLSIGAAANLSWPTERLVIQVLDDSTDPEIKQMVEVECQRWASKGINIRYQIRENRVGYKAGALKEGLKRSYAKHCEYVAIFDAD FQPEPDYLRRAIPFLVQNSDIALVQGRWRFVNSNECLVTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGVWRIAAINEAGGWKDRTTVEDMDLAVRAS LRGWKFVYLGDLQVKSELPSTFKAFRFQQHRWSCGPANLFRKMVMEIVRNKKVRFWKKVLNKIELGFALFLFICGCYDYAHGKNNYFVYLWLQTVTFFIA GVGYIGTII

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Lus10020539 [exp]	0	1
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10041063 [exp]	9.7	0.8177
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	14.3	0.8028
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	16.6	0.8137
AT3G01810			unknown protein		Lus10041590 [exp]	16.7	0.8079
AT1G04840			Tetratricopeptide repeat (TPR)...		Lus10020743 [exp]	19.3	0.7835
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031185 [exp]	20.3	0.8146
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10004706 [exp]	21.6	0.8106
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10001461 [exp]	22.0	0.7972
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Lus10009387 [exp]	27.5	0.7478
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	29.9	0.7894

Compare expression of checked genes

Lus10020539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.