Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42820 291 / 2e-99 C3HZnF ATU2AF35B Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G27650 291 / 3e-99 C3HZnF ATU2AF35A U2 snRNP auxiliary factor small subunit, putative (.1.2) AT1G10320 114 / 5e-29 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G44785 103 / 8e-29 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009389 [exp] 346 / 1e-120 AT5G42820 362 / 3e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10008648 [exp] 308 / 1e-105 AT5G42820 358 / 6e-125 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10003375 [exp] 302 / 2e-103 AT5G42820 357 / 3e-124 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10002845 [exp] 302 / 2e-103 AT5G42820 355 / 1e-123 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10038139 [exp] 115 / 3e-29 AT1G10320 570 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10010687 [exp] 64 / 2e-11 AT1G10320 288 / 9e-88 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G188900 [exp] 328 / 2e-113 AT5G42820 311 / 4e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.006G116700 [exp] 311 / 5e-107 AT5G42820 295 / 7e-100 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.005G258000 [exp] 302 / 4e-104 AT1G27650 352 / 1e-122 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.002G003000 [exp] 290 / 2e-99 AT1G27650 349 / 2e-121 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.009G149600 [exp] 124 / 2e-36 AT1G27650 137 / 1e-41 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.004G228600 [exp] 115 / 3e-29 AT1G10320 462 / 1e-151 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10020540 pacid=23172380 polypeptide=Lus10020540 locus=Lus10020540.g ID=Lus10020540.BGIv1.0 annot-version=v1.0 ATGGCGGAGCACTTAGCGTCGATCTTCGGGACGGAGAAGGACAGGGTGAACTGTCCGTTCTACTTCAAGATCGGAGCATGCCGCCATGGCGACCGTTGCT CGAGGATGCACACGAAGCCGAGCGTCAGCCCTACGCTTCTCTTATCCAACATGTACCAGCGCCCTGATATGATTACCCCCGGCGTCGACCCCAACGGCAA CCCCATCGATCCTCGCAAGATCCAGGAGCACTTCGAGGATTTCTATGAAGATCTATTTGAGGAGTTGAGCAAGTATGGGGAGATTGAGAGCTTGAATGTT TGTGATAATCTAGCTGACCATATGGTGGGGAACGTTTATGTTCAGTTTAGGGAAGAAGATCAGGCTGCGAATGCCTTGAGAAATCTCACCGGAAGGTTTT ATGCCGGTCGACCCATCATTGTCGATTTCTCCCCGGTTACAGACTTCCGGGAGGCCACTTGCAGGCAGTACGATGAGAACACTTGCAACCGCGGGGGTTA CTGTAACTTTATGCATCTCAAAAGGATTGGAAGGGCGGTTTCGTGTCGGGGTGCTGGAAGATATAAGATCGACTGGGAATTGAATTGGCAGTTCGAGTTT ATCGTTGTCTACTGGATTTCACCAGTGTTGCAGGGATGCGTCAAAGAGCCCGAAAGTTCCGAGTTTCTTTTGGTTTCGTCTTCTATTCTTGGAAATGCTT TAGGACCATTCTAA
AA sequence Show only first row Show all	>Lus10020540 pacid=23172380 polypeptide=Lus10020540 locus=Lus10020540.g ID=Lus10020540.BGIv1.0 annot-version=v1.0 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRMHTKPSVSPTLLLSNMYQRPDMITPGVDPNGNPIDPRKIQEHFEDFYEDLFEELSKYGEIESLNV CDNLADHMVGNVYVQFREEDQAANALRNLTGRFYAGRPIIVDFSPVTDFREATCRQYDENTCNRGGYCNFMHLKRIGRAVSCRGAGRYKIDWELNWQFEF IVVYWISPVLQGCVKEPESSEFLLVSSSILGNALGPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Lus10020540 [exp]	0	1
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10009389 [exp]	1.0	0.9032
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10032305 [exp]	5.7	0.8479
AT2G23090			Uncharacterised protein family...		Lus10014734 [exp]	6.3	0.8259
AT2G25760			Protein kinase family protein ...		Lus10005479 [exp]	7.1	0.8419
					Lus10012125 [exp]	11.5	0.8103
AT1G30890			Integral membrane HRF1 family ...		Lus10027039 [exp]	13.5	0.8662
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10024680 [exp]	14.9	0.8148
AT1G66080			unknown protein		Lus10031356 [exp]	16.1	0.8541
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10013373 [exp]	16.7	0.8389
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Lus10031334 [exp]	16.8	0.8391

Compare expression of checked genes

Lus10020540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.