Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44750 64 / 2e-12 HDT1, HDA3, ATHD2A, HD2A HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) AT5G03740 63 / 6e-12 C2H2ZnF HD2C, HDT3 HISTONE DEACETYLASE 3, histone deacetylase 2C (.1) AT5G22650 57 / 7e-10 ATHD2B, HDT2, HDT02, HDA4, HD2B ARABIDOPSIS HISTONE DEACETYLASE 2, histone deacetylase 2B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009390 [exp] 171 / 3e-53 AT3G44750 166 / 1e-50 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10020543 [exp] 84 / 1e-19 AT5G22650 136 / 1e-38 ARABIDOPSIS HISTONE DEACETYLASE 2, histone deacetylase 2B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G188800 [exp] 83 / 2e-19 AT3G44750 122 / 1e-33 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Potri.009G149400 [exp] 83 / 3e-19 AT3G44750 126 / 5e-35 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Potri.006G116500 [exp] 80 / 4e-18 AT5G03740 117 / 8e-31 HISTONE DEACETYLASE 3, histone deacetylase 2C (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020541 pacid=23172277 polypeptide=Lus10020541 locus=Lus10020541.g ID=Lus10020541.BGIv1.0 annot-version=v1.0 ATGACGGCTGTTGAGAACGGTAAGGCTGCGAAGGCTAAGCCTGCACCTGCCAAGGCAGTAGCTGCGAAGCCTGAGGCTTCGAACCCGAAAGCCAAACAGG TTGTGCCTGCTAAACCTCCTACTGCTGAATCTGATGATGATTCAGAGGATTCAGATGGTGAGGATGATGATGAAGATGGATCCAGTGAAGATGAGTCTGG AGAGGAAATGTCTATCGAAGGTGATGAATCTGAGGACGAAGATGACAGCGAGGAAGAAGAGGAGACTCCAACACCTAAGAAGCCAGAGTCTGGCAAGAAG AGGGCCAATGGCTCTGCACAAAAAACTCCAGTGCCCAACAAGAAGGCAAAGGCTTCTGCTACCACTACTCCCCAGAAGACAGATGGAAAGAAGTCCGGCC ACACCGATACCCCTCATCCTGCTAAGAAAGAGGGTAAATCTGCTGCCAAGACTCAGACCCCCAAGTCTGCTGGCTCCGTCACATGCAAGTCTTGCGACAG GACGTTTGGATCGGATGCTGCCATGCAGTCCCATGCCAAGGCTAAGCATTCTGCTGCCAAGTGA
AA sequence Show only first row Show all	>Lus10020541 pacid=23172277 polypeptide=Lus10020541 locus=Lus10020541.g ID=Lus10020541.BGIv1.0 annot-version=v1.0 MTAVENGKAAKAKPAPAKAVAAKPEASNPKAKQVVPAKPPTAESDDDSEDSDGEDDDEDGSSEDESGEEMSIEGDESEDEDDSEEEEETPTPKKPESGKK RANGSAQKTPVPNKKAKASATTTPQKTDGKKSGHTDTPHPAKKEGKSAAKTQTPKSAGSVTCKSCDRTFGSDAAMQSHAKAKHSAAK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03740	C2H2ZnF	HD2C, HDT3	HISTONE DEACETYLASE 3, histone...		Lus10020541 [exp]	0	1
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10009390 [exp]	1.0	0.9746
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10008853 [exp]	3.2	0.9022
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10010430 [exp]	4.0	0.9061
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10002172 [exp]	4.2	0.9011
AT3G18600			P-loop containing nucleoside t...		Lus10027240 [exp]	5.2	0.9037
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10020542 [exp]	7.5	0.9010
AT5G41970			Metal-dependent protein hydrol...		Lus10000877 [exp]	8.0	0.8999
AT4G20020			unknown protein		Lus10035806 [exp]	8.1	0.8765
AT1G74050			Ribosomal protein L6 family pr...		Lus10038776 [exp]	8.9	0.9024
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10035418 [exp]	10.4	0.8902

Compare expression of checked genes

Lus10020541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.