Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44750 102 / 3e-26 HDT1, HDA3, ATHD2A, HD2A HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) AT5G22650 103 / 5e-26 ATHD2B, HDT2, HDT02, HDA4, HD2B ARABIDOPSIS HISTONE DEACETYLASE 2, histone deacetylase 2B (.1.2) AT5G03740 99 / 2e-24 C2H2ZnF HD2C, HDT3 HISTONE DEACETYLASE 3, histone deacetylase 2C (.1) AT2G27840 72 / 5e-15 HDT04, HDA13, HDT4 HISTONE DEACETYLASE 13, histone deacetylase-related / HD-related (.1.2) AT3G12340 42 / 0.0003 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009391 [exp] 226 / 3e-72 AT2G27830 130 / 7e-36 unknown protein Lus10009390 [exp] 141 / 1e-40 AT3G44750 166 / 1e-50 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10020542 [exp] 132 / 3e-39 AT3G44750 123 / 3e-36 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10003376 [exp] 116 / 6e-31 AT3G44750 114 / 2e-30 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10002846 [exp] 103 / 1e-25 AT3G44750 105 / 4e-26 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10020541 [exp] 80 / 5e-18 AT5G03740 83 / 4e-19 HISTONE DEACETYLASE 3, histone deacetylase 2C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116500 [exp] 117 / 3e-31 AT5G03740 117 / 8e-31 HISTONE DEACETYLASE 3, histone deacetylase 2C (.1) Potri.009G149400 [exp] 115 / 7e-31 AT3G44750 126 / 5e-35 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Potri.004G188800 [exp] 115 / 1e-30 AT3G44750 122 / 1e-33 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Potri.007G000500 [exp] 44 / 0.0001 AT3G12340 149 / 1e-38 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020543 pacid=23172342 polypeptide=Lus10020543 locus=Lus10020543.g ID=Lus10020543.BGIv1.0 annot-version=v1.0 ATGTTGTCAATCGAATTCTGGGGTGTTGAGGTTAAGGCCGGTCAGCCTCTTACGGTGACTCCCGGTGATGATTTCCTCCTTCATCTCTCCCAAGCAGCAC TAGAGGAGTCTAAGAAGGGCAAAGATGCAGAATCTGTGCTCCTTTCGGTCACTGTTGGCGGAAAGAAGCTCGTGTTAGGAACACTCTCTTCTGAGAAGTT CCCCCAGCTGGCACTTGATCTCGTGTTCGAGACGGAGTTTGAGCTGTCCCACAACAGGAAGGGTGGAAATATTTCATCCTCCGATGAAGAGGATAATCAG ATGATGGGAAATATTAATGCTGAGAAACCAAAGCTTGAAGCATTAAAGCCTGAGGCTGCAAAACCAATTACCAGACCTGCAGAAGAGCCTGCTAAACTCC AAACTGAATCTGCCGAAGATGATGATTCTTCTGATGATGATGAAGATGATTCTGACGATGTATCTGGGGAGGATGTGTCTGGAGAGGATGGCTCTGATGA TTCAGATGATTCAGACAGCGAAGAAGAAGATGAGGATGAGACTCCGAAAAAGCCCGAGTCTGGCAAAAAGAGATCCGCCAATGACTCCGGAATCAAAACC CCAGTGCCAAACAAGAAGGCCAAACAAGCTACTCCCCAAAAGACTGATGGAAAGAAGGGAGGCCACACGGATACTCCCCATCCGGTGAAGAAAGACGGAA AGCCAGCAGCTGCGTCTAAGCCGACGAAGACTGCCAAACCCAGGAGGTTTGGATGA
AA sequence Show only first row Show all	>Lus10020543 pacid=23172342 polypeptide=Lus10020543 locus=Lus10020543.g ID=Lus10020543.BGIv1.0 annot-version=v1.0 MLSIEFWGVEVKAGQPLTVTPGDDFLLHLSQAALEESKKGKDAESVLLSVTVGGKKLVLGTLSSEKFPQLALDLVFETEFELSHNRKGGNISSSDEEDNQ MMGNINAEKPKLEALKPEAAKPITRPAEEPAKLQTESAEDDDSSDDDEDDSDDVSGEDVSGEDGSDDSDDSDSEEEDEDETPKKPESGKKRSANDSGIKT PVPNKKAKQATPQKTDGKKGGHTDTPHPVKKDGKPAAASKPTKTAKPRRFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22650		ATHD2B, HDT2, H...	ARABIDOPSIS HISTONE DEACETYLAS...		Lus10020543 [exp]	0	1
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10014969 [exp]	2.8	0.8300
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10024942 [exp]	4.0	0.7843
AT1G05730			Eukaryotic protein of unknown ...		Lus10027051 [exp]	6.0	0.7723
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10038851 [exp]	9.0	0.7754
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10023825 [exp]	16.1	0.7516
AT3G10350			P-loop containing nucleoside t...		Lus10021449 [exp]	16.2	0.6403
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10032565 [exp]	19.4	0.7104
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10024943 [exp]	23.4	0.7331
AT4G24830			arginosuccinate synthase famil...		Lus10033978 [exp]	26.3	0.6937
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10031705 [exp]	27.0	0.6836

Compare expression of checked genes

Lus10020543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.