Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27830 159 / 2e-49 unknown protein AT4G22758 62 / 7e-12 unknown protein AT1G70780 53 / 6e-09 unknown protein AT5G37730 46 / 2e-06 unknown protein AT1G23150 44 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009391 [exp] 238 / 6e-78 AT2G27830 130 / 7e-36 unknown protein Lus10015082 [exp] 87 / 1e-21 AT2G27830 64 / 3e-13 unknown protein Lus10000385 [exp] 74 / 7e-17 AT2G27830 110 / 5e-31 unknown protein Lus10006996 [exp] 64 / 1e-12 AT2G27830 100 / 6e-27 unknown protein Lus10000386 [exp] 56 / 2e-09 AT4G22758 139 / 2e-40 unknown protein Lus10006995 [exp] 52 / 6e-09 AT4G22758 110 / 9e-31 unknown protein Lus10034416 [exp] 44 / 2e-05 AT1G70780 168 / 8e-55 unknown protein Lus10031920 [exp] 43 / 3e-05 AT1G70780 172 / 4e-56 unknown protein Lus10019143 [exp] 42 / 5e-05 AT1G70780 167 / 4e-54 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G149200 [exp] 171 / 3e-54 AT2G27830 183 / 6e-59 unknown protein Potri.004G188600 [exp] 165 / 9e-52 AT2G27830 160 / 5e-50 unknown protein Potri.003G116300 [exp] 96 / 9e-25 AT2G27830 125 / 2e-36 unknown protein Potri.003G116200 [exp] 66 / 7e-13 AT4G22758 131 / 5e-37 unknown protein Potri.001G116200 [exp] 56 / 1e-09 AT4G22758 117 / 5e-32 unknown protein Potri.008G131600 [exp] 49 / 1e-07 AT1G70780 183 / 2e-60 unknown protein Potri.010G110800 [exp] 48 / 3e-07 AT1G70780 188 / 9e-63 unknown protein Potri.017G125300 [exp] 45 / 5e-06 AT1G70780 109 / 2e-31 unknown protein Potri.004G089700 [exp] 39 / 0.0005 AT5G37730 108 / 1e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020544 pacid=23172382 polypeptide=Lus10020544 locus=Lus10020544.g ID=Lus10020544.BGIv1.0 annot-version=v1.0 ATGAGGAACAGCAACAACCGGACGATCGAGAAGGGCACCAGTCGAAAGAACAAGCTAACGGAGCGAGCGGTGTCGTTCCACGGCTCCGATCACATAACGG CGACGAATCCAACACCGACGGATCCCAAGCTTCGAAGGCCGAAGACTCTGCCCGACCTGCGACGGAACTTGGCGGCGGGATCCGTCGTGGCTGCTTCCAA TATCAGGCCGTTGAAGCTGACGAAGCTCCTCCTCAACGTCACCGTCCAAGGAAGCGTCGGCGCCGTACAGGTTCTTGCGGCGCCGGAATCTAGCGTCGGA GATCTAATCTCGATTGTCGTCCGTCAGTACAACAAGGAAGGCCGGCGGCCAGTGATTGCAGGCGATTGCTCCCGATTCGACCTCCACTACTCCCAGTTCA GCTTAGAGAGTCTGGAAAGAACAGAGAAGCTTCAGGAATTAGGATCGAGGAATTTCTTTCTGTGCGCCGTGGAGAAGAAGGAGGTCTCCAGCAGCGGCGG CGATGGTATGTCGGCGTCGTGTTCAACGGAAGCTGAGAAGGAGACGAAGAGGAGTGGATTTCCGTGGCTGAAATTCATAGATTTCCGGCTGTAA
AA sequence Show only first row Show all	>Lus10020544 pacid=23172382 polypeptide=Lus10020544 locus=Lus10020544.g ID=Lus10020544.BGIv1.0 annot-version=v1.0 MRNSNNRTIEKGTSRKNKLTERAVSFHGSDHITATNPTPTDPKLRRPKTLPDLRRNLAAGSVVAASNIRPLKLTKLLLNVTVQGSVGAVQVLAAPESSVG DLISIVVRQYNKEGRRPVIAGDCSRFDLHYSQFSLESLERTEKLQELGSRNFFLCAVEKKEVSSSGGDGMSASCSTEAEKETKRSGFPWLKFIDFRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27830			unknown protein		Lus10020544 [exp]	0	1
AT2G27830			unknown protein		Lus10009391 [exp]	2.0	0.7978
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10007105 [exp]	2.0	0.7922
AT4G29070			Phospholipase A2 family protei...		Lus10035314 [exp]	3.9	0.8057
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10000603 [exp]	11.5	0.7785
AT5G63905			unknown protein		Lus10018677 [exp]	12.5	0.7563
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Lus10030874 [exp]	15.2	0.7338
AT4G38060			unknown protein		Lus10032845 [exp]	16.5	0.7958
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	17.6	0.7818
AT5G42440			Protein kinase superfamily pro...		Lus10001120 [exp]	20.4	0.7621
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Lus10030147 [exp]	23.9	0.7632

Compare expression of checked genes

Lus10020544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.