Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22640 635 / 0 EMB1211 embryo defective 1211, MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (.1), MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009392 [exp] 1274 / 0 AT5G22640 765 / 0.0 embryo defective 1211, MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (.1), MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (.2) Lus10034504 [exp] 97 / 5e-24 AT5G22640 99 / 6e-26 embryo defective 1211, MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (.1), MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G149100 [exp] 646 / 0 AT5G22640 753 / 0.0 embryo defective 1211, MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (.1), MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (.2) Potri.004G188432 [exp] 72 / 1e-14 ND / Potri.019G015768 [exp] 44 / 0.0004 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10020545 pacid=23172296 polypeptide=Lus10020545 locus=Lus10020545.g ID=Lus10020545.BGIv1.0 annot-version=v1.0 ATGGCGACCGACGGCTACACTCCCGACTCCGGCACAGAATCGGACTCCGAGCCCGAATCCGACTACAGCTACGACGCTGAAGGCTACACCATCGGCGAAT CCCCGAGCCGCGAATCGGGCGAGCTCACCCCACTACCCAAGGGCCACCAAATCTCCGCGGAAGCCAACTTCGCCAAATACAAAGAAGTCCTAGACGAATT GCAGGAAGAGAAGCTCAAGGAAATCGATGACGACGACCGGTCGCTCTCCTCCTGGGAGGAGCAATGGGATTTCCCCAAGGATAAGGAGCAATGGAGGGAG ACGGATTTGAAGGAGTACTGGGCGGATGCTCCTCTGTGTATGAGGAAACCCGGGTGGGACCCTTACGAGGCCGATAGGGAGGATTGGGATGTGGTGTATG ATGAAATTTATCGAGGGAAGGATCCAAAGATTGAGCCTTTTTATGTGCCGTACAGGAAGCCTTACCCTGTTGTTCCGGATAATCACGCTGATATTAAGAA CCCTAAGGATGTGATTGAGGAATTGGATCGGATTGAGGAGTTTTTGACTTGGGTTAGCTTCGTTTTCCAGGATGGAAGCTCGTATGAAGGCACTGTTTGG GATGACCTGGCTCATGGAAAAGGTGTCTATGTCGCGGAGAAGGGGCTCGTCAGATATGAAGGTGAATGGCTTAACAATGACATGGAAGGTCACGGAGTTG TTGAAGTCGATATACCTGATATCGAACCGATACCTGGTTCCAAGCTCGAGGCGAAGATGCGAGCTGAAGGGAAAATAGATGAAGGGAAAATAGTCGGAAG GGACTTTATGTCGCCGGAAGACAGAAAATGGCTGGAGATGGATGTTGAAGACAGCTTGCGACTCGCCAATGGGAAGTTTGAGGTTCCCTATTATGAGAAG AACCTGTGGCTCAAATACTACGGCAGGAAACCGGAGAAAGGTCGATATCGATACTCTGGCCAGTGGAAGCATGGTAGGATGCATGGGTGTGGGATCTATG AGCTGAACGAGCATCATTTGTTTTCTGATTTACTTTTCTCCCCACCCAGAGAGAAACTGCCGTTTTCATTATTAACAGTCAGACGCTTTCAGATGCATGC AGGAATTGCTGAAGTAGCTGCTGCAAAAGCTCGTATGTTTATGTATAAACCTGACGGAATGGTCAGGGAAGAAAGAGGTCCATATAGTGACCCGCAACAT CACTATTTCTATGAAGATGAAGATATGTGGATGGCACCTGGCTTCATTCACCAGTTCCATGAAGTCCCTGATTACTGGAAAAGATATGTGCAAGACGTTG ATCAAGAGCGAGAGATGTGGCTAAACTCGTTTTACAAGTCCCCGCTGAGGATCCCGATGCCTTCCGAGCTCGAGCACTGGTGGTCAGAAGATCAGGAGGC TGAATTTGTTGTTCTAAGTAAGGAACCGGAACCAGAACCAGATCCGGAGGATCCATCGAAGCTCGTGGACACCGAAGGCACCGAGGATGATCTTGTCATT TTACACACACCAACCGGACGGATAATAAACTTGATCGACGACGAGGAGCATGGTATACGCATGCGGTGGCAGCACGAAGAAGATGCCGAAACGGACGAAC CTCAGCTCTTACCCCTGGGGTTCGACGAGTTCTATGGGATCGAAAGGGAAGTAGAAGAAACAAGAGGGCAGCGTCTCTTGAGATCGGTCGAAAATCTAGT GAAGCCGATAATCGATGGCCTCGAGAAATGGAGCGAAGAGAAGAAGAAAGACGGTGACTTGAAAAGGAAGCTGGGCGAGACTGAGCTCGAGCTGGTGGAA GCTCAACTGTCTCTAGAAGAGGCCATTGATAGCATCGATGAAGATGTCGATGATGCGGAAGAAATCGAAGAGGAAAGGAAAGTAGACCTCGACGAGAAAG AGTCTGTCAATGAGACCGAAAAGGTTGTTGAAGATTCTTTGGAAGAAGAGAAGGTGGAGGAAAAGATTCCATTGGAGAAGAAGGTGGAAGAAAAGATTCC GTTTGAGAAGAAGGAAGATACTCCTTCCTTAAGTAGACGAGATAAAGAACCGGTCTTTGAAGAGAAAGAAGATGAAGATGAAGATGAAGAAGAGGAAGAT GATGATGCTCCACCGTCGAGTTTTGGCTCTGTCGCCCAATCTGATGAACCAAAACAGGACGGTAAGAAAGGAAATGGAACCGGACGAAGATCTCCTTTCG CCACTGCATCGTTACTTTTCAGATCTTGCAGCCTTATTTCAGCTGTTCCTTCGAAGCTACAGCAATCCTTTTCCGCTAGCAGGGACATGACAATGAATCG TGAGCATCTGAACCCTTTGATCCATTCAAAGACGGCGAATCTAGTGAGGTTCCCTCCGGTTCTCAGTGAAATGGGAAGCTTGCGAGCCAAGAAACCTACA GGCGAGAAGCTTGAACCAAGAAACCTACAGTCCATCAGAACTGCTTCGCAGTTACGCTCCTTATCACGAATCCTGTCACGCAATTCCCCTAAAGAACGTC CGAGAATGCAAGGAAGAAAGGAAATCAGTAGTTGGCTTCATGCAGCACCAGAGACAGATTCAGACTGCCTTCTGTCAATGCACACACAGATTCCATTCCC CCAAATCGCTCAGTCCTATTCTTCGATTCGTCAAGAACAGCCCTCGTTAAATTAA
AA sequence Show only first row Show all	>Lus10020545 pacid=23172296 polypeptide=Lus10020545 locus=Lus10020545.g ID=Lus10020545.BGIv1.0 annot-version=v1.0 MATDGYTPDSGTESDSEPESDYSYDAEGYTIGESPSRESGELTPLPKGHQISAEANFAKYKEVLDELQEEKLKEIDDDDRSLSSWEEQWDFPKDKEQWRE TDLKEYWADAPLCMRKPGWDPYEADREDWDVVYDEIYRGKDPKIEPFYVPYRKPYPVVPDNHADIKNPKDVIEELDRIEEFLTWVSFVFQDGSSYEGTVW DDLAHGKGVYVAEKGLVRYEGEWLNNDMEGHGVVEVDIPDIEPIPGSKLEAKMRAEGKIDEGKIVGRDFMSPEDRKWLEMDVEDSLRLANGKFEVPYYEK NLWLKYYGRKPEKGRYRYSGQWKHGRMHGCGIYELNEHHLFSDLLFSPPREKLPFSLLTVRRFQMHAGIAEVAAAKARMFMYKPDGMVREERGPYSDPQH HYFYEDEDMWMAPGFIHQFHEVPDYWKRYVQDVDQEREMWLNSFYKSPLRIPMPSELEHWWSEDQEAEFVVLSKEPEPEPDPEDPSKLVDTEGTEDDLVI LHTPTGRIINLIDDEEHGIRMRWQHEEDAETDEPQLLPLGFDEFYGIEREVEETRGQRLLRSVENLVKPIIDGLEKWSEEKKKDGDLKRKLGETELELVE AQLSLEEAIDSIDEDVDDAEEIEEERKVDLDEKESVNETEKVVEDSLEEEKVEEKIPLEKKVEEKIPFEKKEDTPSLSRRDKEPVFEEKEDEDEDEEEED DDAPPSSFGSVAQSDEPKQDGKKGNGTGRRSPFATASLLFRSCSLISAVPSKLQQSFSASRDMTMNREHLNPLIHSKTANLVRFPPVLSEMGSLRAKKPT GEKLEPRNLQSIRTASQLRSLSRILSRNSPKERPRMQGRKEISSWLHAAPETDSDCLLSMHTQIPFPQIAQSYSSIRQEQPSLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10020545 [exp]	0	1
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10009392 [exp]	1.0	0.9903
AT4G26370			antitermination NusB domain-co...		Lus10010325 [exp]	2.2	0.9523
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Lus10009197 [exp]	2.8	0.9546
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	3.2	0.9642
AT4G21770			Pseudouridine synthase family ...		Lus10007657 [exp]	3.5	0.9490
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001220 [exp]	4.2	0.9570
AT3G05510			Phospholipid/glycerol acyltran...		Lus10029891 [exp]	4.9	0.9475
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10035953 [exp]	5.8	0.9382
AT4G26370			antitermination NusB domain-co...		Lus10013400 [exp]	7.1	0.9430
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10039071 [exp]	7.9	0.9483

Compare expression of checked genes

Lus10020545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.