Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 225 / 1e-65 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 224 / 4e-65 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 222 / 1e-64 Leucine-rich repeat protein kinase family protein (.1) AT5G39390 211 / 2e-63 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 211 / 1e-60 EFR EF-TU receptor (.1) AT3G47110 210 / 2e-60 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 168 / 9e-46 Leucine-rich receptor-like protein kinase family protein (.1) AT1G09970 167 / 3e-45 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G28490 157 / 7e-42 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 153 / 1e-40 HSL2 HAESA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009394 [exp] 549 / 0 AT3G47570 642 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019525 [exp] 337 / 9e-107 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043368 [exp] 335 / 5e-106 AT3G47570 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030636 [exp] 247 / 1e-73 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037954 [exp] 227 / 6e-72 AT3G47570 261 / 7e-84 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 242 / 1e-71 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038686 [exp] 240 / 8e-71 AT3G47570 752 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 238 / 3e-70 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 238 / 4e-70 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G060100 [exp] 306 / 4e-95 AT3G47570 670 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G037400 [exp] 304 / 4e-94 AT3G47570 622 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G037400 [exp] 243 / 5e-72 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G100901 [exp] 234 / 5e-72 AT5G39390 394 / 9e-133 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 241 / 2e-71 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 241 / 3e-71 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 240 / 6e-71 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 238 / 3e-70 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 237 / 8e-70 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 235 / 3e-69 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10020546 pacid=23172294 polypeptide=Lus10020546 locus=Lus10020546.g ID=Lus10020546.BGIv1.0 annot-version=v1.0 ATGTCTAAAAACGCATTCACTGGTTCAATCCCAAAGTCCTTGGGAGAAATAAAAGGCCTGGAAATCCTGGACCTATCAAACAACACTCTATCCGGCATCA TTCCTCCAGAAGTCCTCAACTTACAAGCCCTTCAGTCCTTGAACTTGTCATTCAACAATCTCGAAATCGAAGTTTGTAACGGAATCCAATCTTGCAGCAA ACCCAAAGATAGTTCCCACGCTAGCTTGCAAGAACAGTCGATAGAATCGAAGGAGACTGGTGATCGTTCTGATAATCAGTGCAGTTATAGCAACAGCAGC ACTATGCTTCACACAATCAAGGTCCTGAACGTGGAAAAGACCGGCTCTTGGAACAGCTTCCTAGCAGAGTGCAAGGCCTTACGAAACGTGAAGCACCGAA ACCTTGTGAAGCTGATCACAACATGTTCGAGCTTGGACCACAAAAACAAAGAGTTCTGGGCTCTGGTTTACTATTTCCTCCCGAATGGAAGCCTAGCGGA TTGGTTAAGAAACAGTGACAATAATGGGTTCAATCTACTGCAGAGACTCGACATAGCCATCGATGTCGCGAGCGTTCTAGATTACCTCCACCACGATAGT GAAGTCCCAGTCGTTCACTGTGATCTGAAGCCAAGCAACATTTTGCTAGACCGACACATGACTGCAAAAGTCGGAGATTTCGGTCTGGCCAAGCTGTTGA TAGAGAATATGGGCTGCGAGAAATCGTCCATTAGCTCCCTCCACTGCCTCAAAGGCTCCATTGGATACATTCCTCCAGAGTACGGCCTGGGTTCCAAACC GTCGACCTCCGGCGACGTATACAGCTTCGGAGTGACACTGCTTGAGCTGATCATCGGGAAGAGCCCTGCCGACGCGATCTTGGGAAACAGACCGCTGGTC GAGTGGGTGAAGTCGGTGACATTGCCGGACGACGTGATGATGAGAATGGTGGACGTTTTCGCCGGCGACAGGGAGGCGGCGGAAAAGGCGGAGCGATGTG TGATGAAGTTGATCGGTGTTGGGCTTTCTTGCGCGGCGGATGTGCCTGAAGAGCGGATCACCATGAGAGACGCTCTGTGGAAACTTCAAGCTGCGAGGAA AGACGTCGACAGTAGCACTTCCACTCCGATAGAGCCGTTGACGGCGACGTGGAGGAAAAATGACGGAGTTTACTAA
AA sequence Show only first row Show all	>Lus10020546 pacid=23172294 polypeptide=Lus10020546 locus=Lus10020546.g ID=Lus10020546.BGIv1.0 annot-version=v1.0 MSKNAFTGSIPKSLGEIKGLEILDLSNNTLSGIIPPEVLNLQALQSLNLSFNNLEIEVCNGIQSCSKPKDSSHASLQEQSIESKETGDRSDNQCSYSNSS TMLHTIKVLNVEKTGSWNSFLAECKALRNVKHRNLVKLITTCSSLDHKNKEFWALVYYFLPNGSLADWLRNSDNNGFNLLQRLDIAIDVASVLDYLHHDS EVPVVHCDLKPSNILLDRHMTAKVGDFGLAKLLIENMGCEKSSISSLHCLKGSIGYIPPEYGLGSKPSTSGDVYSFGVTLLELIIGKSPADAILGNRPLV EWVKSVTLPDDVMMRMVDVFAGDREAAEKAERCVMKLIGVGLSCAADVPEERITMRDALWKLQAARKDVDSSTSTPIEPLTATWRKNDGVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10020546 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	5.7	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	8.0	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	9.8	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009630 [exp]	10.4	1.0000
					Lus10011605 [exp]	11.6	1.0000
					Lus10025268 [exp]	13.7	1.0000
					Lus10024141 [exp]	13.9	1.0000
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10026232 [exp]	14.7	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	17.0	1.0000
					Lus10013255 [exp]	17.9	1.0000

Compare expression of checked genes

Lus10020546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.