Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08250 599 / 0 AtADT6, ADT6 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) AT2G27820 579 / 0 ADT3, PD1 arogenate dehydratase 3, prephenate dehydratase 1 (.1) AT5G22630 556 / 0 ADT5 arogenate dehydratase 5 (.1) AT3G44720 556 / 0 ADT4 arogenate dehydratase 4 (.1) AT1G11790 403 / 5e-139 AtADT1, ADT1 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) AT3G07630 401 / 2e-138 AtADT2, ADT2 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009396 [exp] 810 / 0 AT1G08250 607 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10019526 [exp] 683 / 0 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10043369 [exp] 680 / 0 AT1G08250 599 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10015130 [exp] 409 / 1e-141 AT1G11790 434 / 4e-152 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10031547 [exp] 406 / 2e-140 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10018128 [exp] 386 / 6e-132 AT3G07630 456 / 5e-160 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10036135 [exp] 380 / 3e-130 AT3G07630 449 / 7e-158 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10015561 [exp] 347 / 2e-117 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10020035 [exp] 337 / 3e-113 AT1G11790 426 / 5e-149 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G188100 [exp] 667 / 0 AT1G08250 612 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.009G148800 [exp] 662 / 0 AT1G08250 606 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.011G004700 [exp] 424 / 3e-147 AT1G11790 527 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.004G013400 [exp] 409 / 2e-141 AT1G11790 513 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.008G195500 [exp] 408 / 5e-141 AT3G07630 504 / 2e-179 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0177 [flax] [poplar] PBP PF00800 [flax] [poplar] PDT Prephenate dehydratase
Representative CDS sequence Show only first row Show all	>Lus10020549 pacid=23172264 polypeptide=Lus10020549 locus=Lus10020549.g ID=Lus10020549.BGIv1.0 annot-version=v1.0 ATGAACACTCTATCGCCTCCGTCGCCGTTAACCGGCACCGGTCCCCGCCGTCTCTCCCGCATCCCTTCCGTCCACTGCATCCACCGCTCCTCCGACTCTG TCCACTTCTCCGCCAAATCCGACTGGCAGAGCTCCTGCGCCATCCTCTCCAGCAAAGTCGTCGCTCAGGAAAACAACGGCGCCAGCAGCACTACAACCAG ATCTGGAGCGAACAGCTCCGGCTCCACGGTGAACGGCCACAAGGCGATTGACCTAGATCTGGTCCCGATCGAGAAGGCTACCGTCGAGGCGGATGGAAAC AACAAGCCGAATAAGCTGCAGAAGCCGCTGACGATTACGGATCTGGCTCCTGCTCCGATGCACGGGTCGACTCTTCGAGTCGCGTACCAGGGAGTCCCCG GCGCGTATTCCGAGGCGGCCGCTGGTAAGGCTTATCCGAATTGTGAGGCCATTCCTTGCGATCAATTTGAGGTCGCTTTCCAGGCGGTGGAGCTCTGGAT CGCGGATCGAGCTGTTCTCCCTGTTGAGAATTCGTTAGGCGGATCTATTCACCGTAATTACGATCTGCTCCTCCGCCACCGTCTCCACATCGTCGGAGAG GTACAGCTCCCCGTCCACCACTGTCTGTTGGCGTTACCTGGAGTGAGGAAAGAGTACATCACGCGCGTGATCTCGCATCCTCAAGCTCTGGCTCAGTGCG AGCACACTCTAACCAAAATGGGACTGCAAGCCGCTAGGGAAGCCGTCGACGACACTGCCGGAGCAGCAGAGTACATCGCAGCGAACAACCTCAGGGATAC AGCCGCAATTGCCTCCGCACGCGCCGCCGAGCTGTACGGGATGCAGATTCTCGCCGACGGGATTCAAGACGACTGCGGGAACGTCACTCGCTTCGTGATG CTGGCGCGTGAACCGGTGATCCCCCGTACCGACCGGCCATTCAAGACAAGTATCGTCTTCGCACACGACAAGGGAACCAGCGTCCTGTTCAAAGTCCTAT CGGCGTTCGCGTTCAGGAACATCAATCTGACCAAAATCGAGTCCAGGCCTCACCGGAACCGTCCGATCCGGCTCGTCGACGACGCGAACAACGTCGGGAC GGCGAAGCACTTCGAGTATTTGTTCTACGTCGACTTTGAGGCGTCGATGGCGGAGGTGAGGGCGCAGAACGCGCTGGCGGAGGTGCAGGAGTTCACGTCG TTCTTGCGCGTGTTGGGTAGTTATCCGATGGATATGACGCCCTGGTCCCCTTCTTCTTCATCGTCGTCTTCATCGGCCTCTTAG
AA sequence Show only first row Show all	>Lus10020549 pacid=23172264 polypeptide=Lus10020549 locus=Lus10020549.g ID=Lus10020549.BGIv1.0 annot-version=v1.0 MNTLSPPSPLTGTGPRRLSRIPSVHCIHRSSDSVHFSAKSDWQSSCAILSSKVVAQENNGASSTTTRSGANSSGSTVNGHKAIDLDLVPIEKATVEADGN NKPNKLQKPLTITDLAPAPMHGSTLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGE VQLPVHHCLLALPGVRKEYITRVISHPQALAQCEHTLTKMGLQAAREAVDDTAGAAEYIAANNLRDTAAIASARAAELYGMQILADGIQDDCGNVTRFVM LAREPVIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNINLTKIESRPHRNRPIRLVDDANNVGTAKHFEYLFYVDFEASMAEVRAQNALAEVQEFTS FLRVLGSYPMDMTPWSPSSSSSSSSAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10020549 [exp]	0	1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10015576 [exp]	1.7	0.9846
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10035011 [exp]	2.4	0.9780
AT2G03200			Eukaryotic aspartyl protease f...		Lus10035961 [exp]	4.5	0.9773
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10006258 [exp]	4.7	0.9792
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10019110 [exp]	6.0	0.9765
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10037189 [exp]	6.3	0.9749
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10034449 [exp]	7.4	0.9731
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	7.7	0.9774
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10040416 [exp]	7.7	0.9728
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019885 [exp]	8.4	0.9762

Compare expression of checked genes

Lus10020549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.