Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29940 1832 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT1G15210 1420 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT1G59870 1416 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT3G16340 1397 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G15520 1394 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT1G66950 1338 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G36380 1328 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT2G26910 1300 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT3G53480 1275 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) AT2G37280 1251 / 0 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018230 [exp] 1969 / 0 AT2G29940 2141 / 0.0 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) Lus10014150 [exp] 1413 / 0 AT3G16340 2221 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Lus10037562 [exp] 1384 / 0 AT1G59870 2178 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10041668 [exp] 1382 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10025824 [exp] 1380 / 0 AT1G59870 2220 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10024061 [exp] 1337 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008984 [exp] 1325 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Lus10024060 [exp] 1320 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 1318 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G251100 [exp] 1904 / 0 AT2G29940 2081 / 0.0 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) Potri.001G189500 [exp] 1421 / 0 AT1G59870 2113 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Potri.003G183200 [exp] 1421 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G049600 [exp] 1392 / 0 AT3G16340 2065 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Potri.008G024400 [exp] 1389 / 0 AT1G66950 2011 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.001G048700 [exp] 1384 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 1382 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 1379 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 1374 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 1370 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0181 [flax] [poplar] PF08370 [flax] [poplar] PDR_assoc Plant PDR ABC transporter associated CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10020550 pacid=23172324 polypeptide=Lus10020550 locus=Lus10020550.g ID=Lus10020550.BGIv1.0 annot-version=v1.0 ATGGCGCACCACGATTCCGACGACGAGGAGCTAATTATTTGGAAAGAGATTAGTGTTCTGCCGCCGGAGGAGCGGCGTCACCACTCCGTTCTCCGACGAA CTCCTTCCGAGTTAATCGCTGGCGAGGATCGGATTCGGCTAGCGGAGAAGATCGACGTCCGGAAACTCGACCGCGCCGGTAGGAAGCTGGTGCTCAATAA AGCTCTCGCCACGAACTCTCAGGATAACTCGAATCTCCTCGGCGGAATCAAAGAGCGTCTCGATAGAGTTGAGGTTCGAGTGCCGAATGTGGAAGTTAGA TTCGAGAATTTGAAGATCGAAGCCAATGTTCAGACGGGCTCTCGAGCTCTGCCTAGTCTACTCAATTCGGTTCGTGATGCTGTTGAGTATATTTCTAACA AGCTTAGGGTACATAAGCCGGAACGACATCGTTTGACGATACTGAACAGTGTTAGTGGCCTTGTCAAACCAGGGAGGATAACGTTGCTTTTAGGCCCTCC TGGCGCCGGGAAGTCGACATTGCTTCTAGCTCTTGCCGGCAAACTCGATCCCAACTTGAAAGTAACCGGAAACATCACATACAACGGACAGCCACTAGAT GGATTTTACGTCAAACGAACGGCTGCATACGTCAGCCAAACGGACAACCACATAGCCGAGCTCACCGTTAGGGATACATTCGACTACGCGGCTCGATGGC AAGGAGCCACCGACTCGTTTGCTGGGTGCATTGACGAGCTATCAAAGAGAGAAGACGAGACCAATGTCAACCCAAACCCATCGATCGACGCCTTTATGAA AGCGTCGGTCCAGGGAAGCGAGATCTCGACCGATTACGTGTTGAGAGTGCTCGGGTTGGATGTATGTGCGGACACCAAGGTTGGTAGTCACATGCTTAGA GGGGTCTCCGGTGGGCAGAAGAAACGGGTCACTACAGGAGAGATGATTGTGGGACCAAGGAAGACTTTGTTGATGGACGAAATCTCGACGGGGCTCGACA GCTCCACGACGTACCAAATAGTGAAATGCATGGGCAATTTCGTCCATTTGATGGAAGGAACCGTACTAATGGCTCTACTCCAGCCGCCGCCGGAGACGTT CGACCTCTTCGACGACCTCATCCTGCTGTCGGAAGGCCACTTGGTGTACTCCGGACCTAGATCCGAAGTCCTCGAGTTCTTTGAGTCCTTAGGGTTTCGC TTGCCCCCGCGAAAGGGTGTCGCGGACTTCCTCCAAGAGGTTACATCAAAAAAGGACCAAGCACAATACTGGGCGAACGACACAAGACCATACACGTTCG TCTCCGTGCCAGAGATCGCAAAGGCGTTCAAAGCCTCCCGGTTCTGTACACCCCTCGCCTCGACATTTTCCACTTCCACTTCCGAGGAGGCCACTCATCT CTCGGCAGCAGCATTGGCAAAGACCAAATACGCCGCATCAAGGTGGGACCTCTTGAAAACTTGCTTCGCAAGAGAGATCATACTAATGAAGAGGCAATCC TTCCTCTACATATTCAAGACGGTGCAGGTCATTTTAGTCGGGTTAGTGACCTGCACCATGTTCACCAGGGCAAAACTCCACCCTGGGAACGAACATGATG GGAACCTCTACTTGGCGTGCCTCTTCTTCGGCCTAGTCCATCTACAGTTCAACGGGTTCGGGGAGTTGCCACTCCTCATCGATCGGCTCCCCATTTTCTA CAAGCAGCGCGACAACCTCTTCCACCCCGCATGGGCTTGGTCACTGGCAAGCTTCGTGGTTCGCGTGCCATACTCGATCATCGAGGCCGTGATGTGGACC GTTGCCGTCTACTACACTGTAGGGTTTGCATCCGACGTCGGAAGATTCTTCCGGTTCATGTTCCTTCTGTTTTGGGTGCATCAATCGGCAATGTCGATCT TCCGAACAATGGCAGCTGCCGCGAGGGATCCGGTCATCGCGAATACGTTCGCTTCTGCTGCTTTGTTGATCGTGTTCTTGTCCGGTGGATTTATCATTCC GAAAGCCATGATGAAGCCATGGTGGGTTTGGGCTTCGTGGCTCTCGCCGTTAACTTACGGTCAACGTGCAATCTCCGTCAACGAATTTTCGGCTCAAAGG TGGCATCAGATAGCGCCAAGTGGGAACAATACGATCGGACGAGAAGTTCTCCATCAGCACAATCTTCCGGCAGATGATTACTGGTACTGGATTGGCATTG GTGTTCTCGTGTTGTTCACGCTGTTTTTCAACCTCATGATCACCGTCGCTTTGGCCTACCTTCATCCTCTTAAGAGGGCGCAAACTGTCAATCCGCTTGA CGAAGATGAAGATCCGAACGAAAAGGCGAAGGAGAAGACGAAATCCGGTGAAGATGATCGGACGACTAAGAGGACTGGGATGATTTTGCCGTTTCAGCCA TTGACTATGACCTTTCATAAAGTCAACTACTTCGTGGATTTACCCAAGGAAATGAGAGAAAAGGGTTCAACAAAGAAGAGGCTGCAGCTACTATCAGAAG TGAGCGGAGTATTCTCGCCGGGAGTTTTGACGGCGCTGGTCGGAGAGAGCGGAGCCGGTAAGACCACACTGATGGACGTCCTCGCCGGAAGGAAAACCGG CGGGTACATTGAAGGAGACATCAAGATCTCCGGCCACCCGAAAGAGCATCGTACCTTCGCACGAATTTCGGGCTACGTTGAGCAGAACGACATCCATTCG CCTCAGGTCACCGTCGAGGAGTCTCTCTGGTTCTCTTCCTCTCTCCGCCTTCCTAAAGAAGTCGGCAAAGAACAGCGAAAGGAGTTTGTTGAACAAGTAA TGAGATTAGTGGAGCTTGACACATTAAGACAAGCTTTGGTGGGTATACCCGGTTCGACCGGTTTATCAACTGAACAAAGGAAACGGCTTACCATAGCTGT GGAGCTCGTCGCGAACCCTTCGATCATCTTCATGGACGAACCAACATCGGGACTCGATGCTCGGGCCGCAGCCATAGTTATGCGAACGGTTCGCAACACT GTCGACACTGGGCGGACTATCGTCTGCACCATCCATCAGCCCAGTATCGACATCTTTGAAGCCTTTGACGAATTGCTTCTTATGAAACGTGGAGGTAAAG TCATCTATGGGGGAAAGCTTGGAGTTCAGTCAAAGCAAATGGTTGACTATTTCCAAGGGATTGGAGGAGTCCCTTCGATCATCGATGGCTACAATCCGGC CACTTGGATGCTCGATGTCACATCGGCTAGTGTCGAGGAAACCCTCAGTGTAGATTTCGCTCAACTTTATGCCAAATCGGACCAGTACAGAGAAGTCGAG ACATTGATTGAGCAGCTGAGCGAACCACCGAAAGGATCGAAGCCATTGATGTTCCCTACAACATTTGCTAGAAACTCTTGGTCACAGTTCTTGATCTGCC TCAAGAAACAGAATCTTGTCTACTGGAGAAGTCCACAGTATAATAATGCAAGGAATTTTTTTACTGTCGTAGCGGCCTTGATTTTGGGATCTCAATTCTG GGATGTTGGATCGAAAAGGGACACTGTACAATCTTTGTTCACGGTGATGGGAGCGCTCTACTCGGCGTGCATATTCCTAGGAGTCAGCAACTCGACTACG GTCCAACCGATTGTTTCGGTCGAGAGGACAGTGTTCTATAGGGAGAAGGCGGCGGGGTTGTACTCGCCCCTAGCGTATGCAGCTGCTCAAGGCATCGTCG AGCTTCCGTACATCTTCTTCCAGACGATTTTATATAGCTTCATCAGTTACTACATGATTAATTTCGAAAGATCGGCCGCGAAGTTTTTCCTATACTGTTT GTTCATGTTCTTGACGTTCACCTACTTCACGTTCTACGGAATGCTGACGGTGGGGCTGACACCGGCACAACATTACGCTTCGATCATCTCCTCCGCAGCC TACTCGCTGTGGAATCTGTTCTCCGGGTTTCTTCTCCCGAAGAACAACATTCCGGTATGGTGGAGGTGGTTCTACTACCTCTGCCCAACCTCGTGGACTC TACAAGGTATAATCTCGTCGCAACTCGGTAATGTGGAGTCAACGATCACCGGACCGGGGTTCGAGCTGACTGTTAAGGAGTACCTGAGGGAGAACTTCGA TTATGGACCGGACAAAGTTGGGATCTCTGTAGCGGCTCTGCTTGCGTTCTGCTTTGTGTTCTTCGCCACGTTTGCGCTGTCCGTCAAAGTTCTGAACTTC CAAAGAAGATAG
AA sequence Show only first row Show all	>Lus10020550 pacid=23172324 polypeptide=Lus10020550 locus=Lus10020550.g ID=Lus10020550.BGIv1.0 annot-version=v1.0 MAHHDSDDEELIIWKEISVLPPEERRHHSVLRRTPSELIAGEDRIRLAEKIDVRKLDRAGRKLVLNKALATNSQDNSNLLGGIKERLDRVEVRVPNVEVR FENLKIEANVQTGSRALPSLLNSVRDAVEYISNKLRVHKPERHRLTILNSVSGLVKPGRITLLLGPPGAGKSTLLLALAGKLDPNLKVTGNITYNGQPLD GFYVKRTAAYVSQTDNHIAELTVRDTFDYAARWQGATDSFAGCIDELSKREDETNVNPNPSIDAFMKASVQGSEISTDYVLRVLGLDVCADTKVGSHMLR GVSGGQKKRVTTGEMIVGPRKTLLMDEISTGLDSSTTYQIVKCMGNFVHLMEGTVLMALLQPPPETFDLFDDLILLSEGHLVYSGPRSEVLEFFESLGFR LPPRKGVADFLQEVTSKKDQAQYWANDTRPYTFVSVPEIAKAFKASRFCTPLASTFSTSTSEEATHLSAAALAKTKYAASRWDLLKTCFAREIILMKRQS FLYIFKTVQVILVGLVTCTMFTRAKLHPGNEHDGNLYLACLFFGLVHLQFNGFGELPLLIDRLPIFYKQRDNLFHPAWAWSLASFVVRVPYSIIEAVMWT VAVYYTVGFASDVGRFFRFMFLLFWVHQSAMSIFRTMAAAARDPVIANTFASAALLIVFLSGGFIIPKAMMKPWWVWASWLSPLTYGQRAISVNEFSAQR WHQIAPSGNNTIGREVLHQHNLPADDYWYWIGIGVLVLFTLFFNLMITVALAYLHPLKRAQTVNPLDEDEDPNEKAKEKTKSGEDDRTTKRTGMILPFQP LTMTFHKVNYFVDLPKEMREKGSTKKRLQLLSEVSGVFSPGVLTALVGESGAGKTTLMDVLAGRKTGGYIEGDIKISGHPKEHRTFARISGYVEQNDIHS PQVTVEESLWFSSSLRLPKEVGKEQRKEFVEQVMRLVELDTLRQALVGIPGSTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT VDTGRTIVCTIHQPSIDIFEAFDELLLMKRGGKVIYGGKLGVQSKQMVDYFQGIGGVPSIIDGYNPATWMLDVTSASVEETLSVDFAQLYAKSDQYREVE TLIEQLSEPPKGSKPLMFPTTFARNSWSQFLICLKKQNLVYWRSPQYNNARNFFTVVAALILGSQFWDVGSKRDTVQSLFTVMGALYSACIFLGVSNSTT VQPIVSVERTVFYREKAAGLYSPLAYAAAQGIVELPYIFFQTILYSFISYYMINFERSAAKFFLYCLFMFLTFTYFTFYGMLTVGLTPAQHYASIISSAA YSLWNLFSGFLLPKNNIPVWWRWFYYLCPTSWTLQGIISSQLGNVESTITGPGFELTVKEYLRENFDYGPDKVGISVAALLAFCFVFFATFALSVKVLNF QRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10020550 [exp]	0	1
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029385 [exp]	3.0	0.9113
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10002766 [exp]	3.5	0.8994
AT2G43610			Chitinase family protein (.1)		Lus10025948 [exp]	6.0	0.9100
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10041165 [exp]	6.0	0.8879
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10012820 [exp]	7.1	0.9266
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10018785 [exp]	7.7	0.8762
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10002767 [exp]	8.5	0.9210
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10017826 [exp]	8.8	0.8890
AT4G00910			Aluminium activated malate tra...		Lus10001528 [exp]	9.9	0.8897
AT3G53270			Small nuclear RNA activating c...		Lus10001478 [exp]	10.2	0.8622

Compare expression of checked genes

Lus10020550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.