Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44860 240 / 2e-82 Ribosomal protein L24e family protein (.1.2) AT3G53020 82 / 4e-20 RPL24B, STV1 SHORT VALVE1, Ribosomal protein L24e family protein (.1) AT2G36620 81 / 1e-19 RPL24A ribosomal protein L24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009403 [exp] 143 / 3e-42 AT2G44860 120 / 2e-33 Ribosomal protein L24e family protein (.1.2) Lus10008640 [exp] 81 / 9e-20 AT2G36620 243 / 1e-83 ribosomal protein L24 (.1) Lus10035584 [exp] 81 / 1e-19 AT2G36620 241 / 5e-83 ribosomal protein L24 (.1) Lus10024560 [exp] 79 / 9e-19 AT2G36620 238 / 2e-81 ribosomal protein L24 (.1) Lus10032198 [exp] 79 / 1e-18 AT2G36620 240 / 1e-82 ribosomal protein L24 (.1) Lus10006314 [exp] 77 / 2e-17 AT2G36620 233 / 2e-78 ribosomal protein L24 (.1) Lus10029583 [exp] 77 / 2e-17 AT2G36620 232 / 4e-78 ribosomal protein L24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G148500 [exp] 246 / 1e-84 AT2G44860 248 / 1e-85 Ribosomal protein L24e family protein (.1.2) Potri.004G187800 [exp] 245 / 3e-84 AT2G44860 249 / 8e-86 Ribosomal protein L24e family protein (.1.2) Potri.004G085300 [exp] 83 / 1e-20 AT3G53020 199 / 2e-66 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.012G139400 [exp] 82 / 3e-20 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.012G139500 [exp] 82 / 3e-20 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.015G141900 [exp] 82 / 4e-20 AT3G53020 196 / 3e-65 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.003G123101 [exp] 81 / 8e-20 AT3G53020 218 / 8e-74 SHORT VALVE1, Ribosomal protein L24e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF01246 [flax] [poplar] Ribosomal_L24e Ribosomal protein L24e
Representative CDS sequence Show only first row Show all	>Lus10020552 pacid=23172308 polypeptide=Lus10020552 locus=Lus10020552.g ID=Lus10020552.BGIv1.0 annot-version=v1.0 ATGAGGTTGGAGAATTGCTGGTTTTGTTCGTCGAAGATATACCCTGGGCATGGTATCCAATTCGTTCGCAACGATGCTAAGATCTTTAGGTTCTGTAGGT CTAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCAAGGAAGGTAAAATGGACCAAGGCCTATAGGAAGCTGCACGGAAAGGATATGACAAAGGATTC AACCTTTGAGTTCGAGAGGAAGAGGAACAGGCCCGATAGATACGACAGAAACGTCGTCGAAAACACCCTCAACGCCATCAAGAAGATCAGCAAAATCCGA AACGAAAGGGAACACAAGCACATCACGAACAGGTTGAAGGTGAGCAAGATCAAGAATCACAAAGAGGCGGTTAAGGAACTTGATCAGAGCATCCACCTTA TCCATGCGCCAGCTGGTATCAGAGTCACGAAGGATGTCGTTAAAGTTCCCGTACCACAACAAACTGCGGAGAATCGACCGATGGAGGAGTAG
AA sequence Show only first row Show all	>Lus10020552 pacid=23172308 polypeptide=Lus10020552 locus=Lus10020552.g ID=Lus10020552.BGIv1.0 annot-version=v1.0 MRLENCWFCSSKIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRKLHGKDMTKDSTFEFERKRNRPDRYDRNVVENTLNAIKKISKIR NEREHKHITNRLKVSKIKNHKEAVKELDQSIHLIHAPAGIRVTKDVVKVPVPQQTAENRPMEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44860			Ribosomal protein L24e family ...		Lus10020552 [exp]	0	1
AT5G56670			Ribosomal protein S30 family p...		Lus10017473 [exp]	2.4	0.9181
AT3G09500			Ribosomal L29 family protein ...		Lus10003306 [exp]	4.6	0.9050
AT2G46230			PIN domain-like family protein...		Lus10012649 [exp]	6.9	0.8982
AT1G07830			ribosomal protein L29 family p...		Lus10024720 [exp]	7.1	0.8646
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035742 [exp]	8.0	0.8910
AT3G11500			Small nuclear ribonucleoprotei...		Lus10017019 [exp]	8.1	0.9009
AT4G14320			Zinc-binding ribosomal protein...		Lus10010195 [exp]	9.1	0.9058
AT5G23535			KOW domain-containing protein ...		Lus10022069 [exp]	11.8	0.9015
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10019603 [exp]	12.2	0.8774
AT1G25260			Ribosomal protein L10 family p...		Lus10043280 [exp]	13.7	0.8950

Compare expression of checked genes

Lus10020552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.