Plant FIBer expression Database

Lus10020553 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G22620 594 / 0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
AT3G50520 63 / 4e-11 Phosphoglycerate mutase family protein (.1)
AT5G04120 56 / 1e-08 Phosphoglycerate mutase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009404
[exp]
549 / 0 AT5G22620 346 / 2e-116 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
Lus10009403
[exp]
178 / 1e-51 AT2G44860 120 / 2e-33 Ribosomal protein L24e family protein (.1.2)
Lus10015442
[exp]
157 / 4e-44 AT5G22620 178 / 1e-52 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
Lus10014360
[exp]
53 / 2e-07 AT3G50520 313 / 5e-108 Phosphoglycerate mutase family protein (.1)
Lus10026068
[exp]
49 / 4e-06 AT3G50520 312 / 1e-107 Phosphoglycerate mutase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G187700
[exp]
708 / 0 AT5G22620 634 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
Potri.011G052200
[exp]
161 / 1e-45 AT5G22620 184 / 4e-55 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
Potri.007G040700
[exp]
69 / 9e-13 AT3G50520 327 / 2e-113 Phosphoglycerate mutase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0071 His_phosphatase PF00300 His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence
>Lus10020553 pacid=23172373 polypeptide=Lus10020553 locus=Lus10020553.g ID=Lus10020553.BGIv1.0 annot-version=v1.0
ATGTTGTCAGTCGCGGCTTCCTTCCCTCTCCACCACAACCGTTTCCTATTCAACTACCGTCACTCTCCACCGCGCATCATCCTATCTTCTTCTGCCAGTC
TCCAGGAAGTACAGCCGCCGCCGCCGAAAGGTCAAGAAGACGGACGCGTCACATCGGAGCTGTACTCATCCTTCGAGCCGTTCCCTCCGATCAAAGCCGT
GAAGCGAGTGGTGCTCGTACGGCATGGGCAGAGCACTTGGAATGCTGAAGGTAGGATCCAAGGCAGCTCCGATTTCTCCGTTCTGACCAAGAAAGGCGAG
TCCCAAGCTGAGACCTCTCGCCTCATGCTCCTCGAAGATTCCTTCGACGTCTGTTTCAGCAGGTCGAAGAGAACTGCTGAAATCATTTGGGGGAATCGAG
GCGAGGAGATCATCACGGATTCCAATTTGAGAGAAATCGATCTCTACTCCTTTCAGGGATTACTGAAGCATGAAGGGAAGGAGAAATTTGGTGCAGCATT
TCAGCAATGGCAAGGCGATGCACCGAATTTCATCATCGACGGGCACTATCCGGTGAGAGAGCTGTGGGGGAGAGCTAGGAACTGCTGGGATAGAATTTTG
GAGCATGAAAGTAGGTCTGTTCTTGTGGTAGCTCACAATGCTGTTAACCAGGCGCTCGTTGCTACAGCCATTGGATTGGGGACTGAATACTTTAGGATTC
TACTTCAGAGTAATTGTGGAGTTAGTGTCCTGGATTTCACTCCTCGTTCGGACGGTGGATCGCCTTCCATTTGTCTCAATCGTTTGAACCAGACACCGAG
TTCGCCAATTGCAGGTGGAGTTTCGGGAGGAAGGAAAGCAAGCAAGCGGGTGGTTCTTGTTTGCCATGGAACTATGAACATGCTAGGGATGATACAGTCC
CAGAAAACGGCAGAGCTGCTTCTCGATCTGAAAGTAGGCACGATAATCAGCAGTACTGAGAATGCCAGTACTGAGACAGCCATGGCCATCTCCAGAGTCC
AAGAAGCTGCAGATTGCCTTGGTGCTGATTGTGTGCCGCGATATGTAGAGATGAAGTGTATTAACGACCTCGATGCCACAGACATCCTTCACCGGTTAAA
CGAGGAAGAAAGAACTGAAGGCCAGCAGCTACTCCAACCCGGTTTCTTGAACAGATTCAACGACGAAGAGCTATCAGCATTGTGGGATCAATCCAGTAGA
GCATGGCAGTCTGTGCTAGACGAAATAGCAGACGAATCCGAACCAGAAAAGGTTGCGGTCGTAGTGAGCCATCCTGCCGTCCACATTGCACTGATGGCTC
ACTGTCTGAAACTAACCAAAGACTGGATGGCTTCGTTTCATCTCAACGCTGGAAGCATTAGCGTGTTGGATTTTCCGGATGGAGCTACTGGAAGTGGCGT
CGTCCGGTGCATAAACTACACTGCTCATTTGGGACGATGGTCCATCCCCATCACCAGGTCAACCGTTGCCGATGAAGAGTTCTGA
AA sequence
>Lus10020553 pacid=23172373 polypeptide=Lus10020553 locus=Lus10020553.g ID=Lus10020553.BGIv1.0 annot-version=v1.0
MLSVAASFPLHHNRFLFNYRHSPPRIILSSSASLQEVQPPPPKGQEDGRVTSELYSSFEPFPPIKAVKRVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGE
SQAETSRLMLLEDSFDVCFSRSKRTAEIIWGNRGEEIITDSNLREIDLYSFQGLLKHEGKEKFGAAFQQWQGDAPNFIIDGHYPVRELWGRARNCWDRIL
EHESRSVLVVAHNAVNQALVATAIGLGTEYFRILLQSNCGVSVLDFTPRSDGGSPSICLNRLNQTPSSPIAGGVSGGRKASKRVVLVCHGTMNMLGMIQS
QKTAELLLDLKVGTIISSTENASTETAMAISRVQEAADCLGADCVPRYVEMKCINDLDATDILHRLNEEERTEGQQLLQPGFLNRFNDEELSALWDQSSR
AWQSVLDEIADESEPEKVAVVVSHPAVHIALMAHCLKLTKDWMASFHLNAGSISVLDFPDGATGSGVVRCINYTAHLGRWSIPITRSTVADEEF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G22620 phosphoglycerate/bisphosphogly... Lus10020553
[exp]
0 1
AT2G42130 Plastid-lipid associated prote... Lus10021055
[exp]
1.0 0.9612
AT2G29650 PHT4;1, ANTR1 anion transporter 1, phosphate... Lus10040686
[exp]
2.0 0.9516
AT5G08720 unknown protein Lus10025701
[exp]
4.0 0.9440
AT2G29650 PHT4;1, ANTR1 anion transporter 1, phosphate... Lus10018218
[exp]
5.0 0.9417
AT5G07020 proline-rich family protein (.... Lus10005388
[exp]
5.7 0.9459
AT3G15354 SPA3 SPA1-related 3 (.1) Lus10043323
[exp]
6.5 0.9406
AT1G06690 NAD(P)-linked oxidoreductase s... Lus10002744
[exp]
6.7 0.9396
AT5G08720 unknown protein Lus10035962
[exp]
9.2 0.9335
AT1G44575 CP22, PSBS, NPQ... PHOTOSYSTEM II SUBUNIT S, NONP... Lus10029680
[exp]
9.8 0.9410
AT3G53130 CYP97C1, LUT1 LUTEIN DEFICIENT 1, CYTOCHROME... Lus10023891
[exp]
10.1 0.9299

Lus10020553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.