Plant FIBer expression Database

Lus10020554 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G44716 44 / 7e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009406
[exp]
179 / 1e-58 AT3G44716 39 / 1e-04 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G148200
[exp]
64 / 2e-12 AT3G44716 65 / 4e-13 unknown protein
PFAM info
Representative CDS sequence
>Lus10020554 pacid=23172315 polypeptide=Lus10020554 locus=Lus10020554.g ID=Lus10020554.BGIv1.0 annot-version=v1.0
ATGAACAAAATCATGATGAACAAAAACCTTATTCTTCTCCTCAATCTCCTCCTCCTGCTGCAACTCAATTCCATCTCCGCCGTCTCCGTTCCGCCACAGT
CGATTCTCCTCTTCAACTGCTCCAAGATTACATCATCAGTTCACACCACTCATCACTTGATCCAAAACTGCAGCACCGAGCTGGAAACCAGAGCCGGATC
CGGTCCGTGTCTGGTCGTAGCCGATTCGGAAAAGTTTTCCGAAATGGGTTTTCATCCGTTGGATCTACTGGGATGCTCTCACTACCTACTTCCTCCTCCT
CTGCATCCGAGGAGGAGGGTTTCGGTAGAGGTTCCTGATCGGGTCAAGAACTTGTGCGATCAATGTGGCGGCAACTGTGGAGCTGGGTTGAAGTGTCTTT
GCCACCCGCAATTGTGCAGGGATAAGGTGGTTTATGGAGGTGGAAGAAAGATGGGTGCTTCAGGTGGGAGCTTACTTGTGCTTTCATTCATTGTGGTATG
GCTTCTTGTTCTGGTTGTTTGA
AA sequence
>Lus10020554 pacid=23172315 polypeptide=Lus10020554 locus=Lus10020554.g ID=Lus10020554.BGIv1.0 annot-version=v1.0
MNKIMMNKNLILLLNLLLLLQLNSISAVSVPPQSILLFNCSKITSSVHTTHHLIQNCSTELETRAGSGPCLVVADSEKFSEMGFHPLDLLGCSHYLLPPP
LHPRRRVSVEVPDRVKNLCDQCGGNCGAGLKCLCHPQLCRDKVVYGGGRKMGASGGSLLVLSFIVVWLLVLVV

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G44716 unknown protein Lus10020554
[exp]
0 1
AT2G34540 unknown protein Lus10028123
[exp]
3.0 0.8956
AT4G37080 Protein of unknown function, D... Lus10032768
[exp]
5.5 0.8591
AT5G54160 ATOMT1 O-methyltransferase 1 (.1) Lus10039864
[exp]
6.7 0.9054
AT1G17050 SPS2 solanesyl diphosphate synthase... Lus10042491
[exp]
8.4 0.8911
AT2G15310 ATARFB1A ADP-ribosylation factor B1A (.... Lus10002817
[exp]
9.8 0.8868
AT5G18970 AWPM-19-like family protein (.... Lus10021949
[exp]
11.2 0.8967
Lus10004411
[exp]
13.9 0.8398
AT2G41200 unknown protein Lus10032687
[exp]
14.7 0.8718
AT2G37390 NAKR2 SODIUM POTASSIUM ROOT DEFECTIV... Lus10024435
[exp]
16.3 0.8716
AT5G19875 unknown protein Lus10034527
[exp]
17.1 0.8798

Lus10020554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.