Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43820 419 / 7e-144 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT2G43840 405 / 2e-138 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT1G05680 380 / 7e-129 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G05675 373 / 6e-126 UDP-Glycosyltransferase superfamily protein (.1) AT2G31790 368 / 8e-124 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 339 / 1e-112 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT1G24100 333 / 5e-110 UGT74B1 UDP-glucosyl transferase 74B1 (.1) AT1G05530 246 / 2e-76 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1) AT4G15480 244 / 2e-75 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT1G05560 243 / 3e-75 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009412 [exp] 757 / 0 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020559 [exp] 498 / 2e-174 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10008742 [exp] 432 / 1e-148 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10006353 [exp] 393 / 2e-133 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10014148 [exp] 384 / 6e-130 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2) Lus10010712 [exp] 378 / 9e-128 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10006352 [exp] 370 / 9e-125 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10024486 [exp] 369 / 3e-124 AT1G05680 389 / 4e-132 Uridine diphosphate glycosyltransferase 74E2 (.1) Lus10006721 [exp] 357 / 1e-119 AT2G43820 392 / 9e-134 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G140500 [exp] 570 / 0 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.007G117200 [exp] 465 / 7e-162 AT2G43840 461 / 1e-160 UDP-glycosyltransferase 74 F1 (.1.2) Potri.017G032300 [exp] 414 / 9e-142 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G032500 [exp] 411 / 1e-140 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.001G389200 [exp] 403 / 2e-137 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.014G175000 [exp] 403 / 2e-137 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2) Potri.017G032733 [exp] 402 / 3e-137 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032700 [exp] 402 / 3e-137 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G140300 [exp] 400 / 3e-136 AT1G05680 457 / 4e-159 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.004G179300 [exp] 379 / 5e-128 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10020556 pacid=23172350 polypeptide=Lus10020556 locus=Lus10020556.g ID=Lus10020556.BGIv1.0 annot-version=v1.0 ATGGAACCCCAAAACGGCCATGTTTTCCTCCTCCCCTACCCGGGTCAAGGCCACCTGAACCCGATGATCCACTTCGCCCGCCGCCTCATAACCCGAGGCC TCCGAACCACCTTACTCACCACCAACTTCAGCATCTCCTCCTCGAAATTCGGCCCCACAATCGGTCCAGTTCATGTCGAAACCATCTCCGACGGCTTCGA CGAGGGAGGCTTCTCCAGCTCCTCTTCCATCGATCACTACCTGAGCCGCCTCGAACAAGCCGGCTCCAAAACGCTGTCAGATTTGGTTGAAAAGTACAAA ACGACGCCGTATCCGGTCAGCTGCTTGGTATACGAGCCATTTTTGCCGTGGGCGCTTGACGTGGCGAAAGAGCATGGCCTTTATGCAGCGTCGTTTTTCA CTCAGCCGTGCGCTGTGGATTTTATTTATTATAATATCCGGCACGGGCTGCTGAAGCTGCCCGTTGATACGTGGCCGGTTCGTATTCTGGGGTTGCCCGA GTTGGAGCCCCGGGATATGCCGTCGTTCGTGAATGCTCCAGAGGCTTACCCGGCTTATTTCGCGATGGTGGTGAATCAGTTTTCGAATACGGAGAAGGCT GATTACGTGTTGATCAACACGTTCTATGAGCTTGAGAAGGAGGCTCTACACACAATGTCAAAGGTCTGCCCAGTTCTAGCGATCGGACCAACTGTTCCAT CTACATACCTTGACGGTCGAATCGACGACGATGCAGAGTACGGTGTGGACCTCTTTTCCCTAGAGCGATCCATCTCCACCGCTTGGATCGCCACGAAGCC TCCAAAGTCAGTAATCTACGTGGCATTCGGAAGCATGGTCACCTTCAACCAGGCTCAAATGACTGAGCTGGCTTTAGGCTTCAAGCGAACGAACCACTAC ATCATATGGGTCATCCAAGACACCGAGCTGGCCAAGCTCCCGATCGATTTCGTCAGTGACATTGGGGACAAGGCACTGGTCGTGAATTGGGCCCCACAGG TCCAGATCCTAGCCAGCGGGGCCGTGGGTTGCTTTTTCACACACTCTGGGTGGAACTCAACGATCGAGGCCTTAAGCCTGGGAGTACCCATGGTGGCGAT GCCGCAGTGGACAGACCAGCCACCCAACGCAATGCTTGTTGAGCGAGTCTGGAAGGTCGGGATTAGGGTTACGGTCGGGGAGGATGGAATTGTGAGTGGG GATGAAGTGGAGAGATGTGTGAGGGAAGTGATGGAAGGTGAAAAGGGAAAGGAAATGAGGAGCAATTGTGAGAAGTTGAAGGGTTTGGCTTGCTTGGCTA TTAGTGAAGGTGGATCTTCTGATAAGAGTATTGATGAATTTGTATCAAAATTGATGAGTTACAAAAGCCATTAG
AA sequence Show only first row Show all	>Lus10020556 pacid=23172350 polypeptide=Lus10020556 locus=Lus10020556.g ID=Lus10020556.BGIv1.0 annot-version=v1.0 MEPQNGHVFLLPYPGQGHLNPMIHFARRLITRGLRTTLLTTNFSISSSKFGPTIGPVHVETISDGFDEGGFSSSSSIDHYLSRLEQAGSKTLSDLVEKYK TTPYPVSCLVYEPFLPWALDVAKEHGLYAASFFTQPCAVDFIYYNIRHGLLKLPVDTWPVRILGLPELEPRDMPSFVNAPEAYPAYFAMVVNQFSNTEKA DYVLINTFYELEKEALHTMSKVCPVLAIGPTVPSTYLDGRIDDDAEYGVDLFSLERSISTAWIATKPPKSVIYVAFGSMVTFNQAQMTELALGFKRTNHY IIWVIQDTELAKLPIDFVSDIGDKALVVNWAPQVQILASGAVGCFFTHSGWNSTIEALSLGVPMVAMPQWTDQPPNAMLVERVWKVGIRVTVGEDGIVSG DEVERCVREVMEGEKGKEMRSNCEKLKGLACLAISEGGSSDKSIDEFVSKLMSYKSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020556 [exp]	0	1
AT2G39440			unknown protein		Lus10040607 [exp]	2.0	0.9454
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10024201 [exp]	3.7	0.9257
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10021035 [exp]	4.5	0.9196
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10015550 [exp]	7.7	0.8643
AT5G06800	GARP		myb-like HTH transcriptional r...		Lus10023816 [exp]	7.9	0.9124
AT5G21910			unknown protein		Lus10038069 [exp]	8.2	0.9216
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10042962 [exp]	9.2	0.8961
AT2G39440			unknown protein		Lus10018300 [exp]	9.6	0.9242
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10013799 [exp]	11.0	0.9015
AT2G41110		ACAM-2, ATCAL5,...	calmodulin 2 (.1.2)		Lus10021487 [exp]	11.5	0.9192

Compare expression of checked genes

Lus10020556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.