Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27285 219 / 7e-70 Coiled-coil domain-containing protein 55 (DUF2040) (.1) AT2G27280 191 / 2e-57 Coiled-coil domain-containing protein 55 (DUF2040) (.1) AT1G55928 168 / 3e-50 Coiled-coil domain-containing protein 55 (DUF2040) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039072 [exp] 420 / 9e-149 AT2G27285 224 / 3e-71 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Lus10038787 [exp] 417 / 1e-147 AT2G27285 225 / 6e-72 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Lus10009414 [exp] 139 / 1e-39 AT2G27285 110 / 7e-29 Coiled-coil domain-containing protein 55 (DUF2040) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G162500 [exp] 238 / 7e-77 AT2G27285 215 / 5e-68 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Potri.004G201300 [exp] 114 / 4e-30 AT2G27285 105 / 2e-26 Coiled-coil domain-containing protein 55 (DUF2040) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09745 [flax] [poplar] DUF2040 Coiled-coil domain-containing protein 55 (DUF2040)
Representative CDS sequence Show only first row Show all	>Lus10020557 pacid=23172282 polypeptide=Lus10020557 locus=Lus10020557.g ID=Lus10020557.BGIv1.0 annot-version=v1.0 ATGAAGAAGTACGGTTTGCAACTGAGAGTGCAGCCGTCCCAGCATAAAAAACCACCCAGGCCACCTCCTCCCAAGCTCCTAGGGTTCATGAACGATGATG GTGATGAAGATGAGGACAATGTCGAGCGAGACATTGCACGGCAAGCTACCAAGACCAAGTCTCACAAGGATATCGAGGAGCAGCATAAGAAAGCGTTGGA GGAAGACCCCTCTGTGTTTGATTATGATGGAGTATACGATGAGATGAAGCAGAAAATTGTTCGTCCACGGATTGAAGATAAGGAACAAAAAAAGTCCAAG TATATTGAGACTCTGAAAGCGAAAGCTATAGAAAGGGAACGCCAACAGGAGATCGTGTACGAGAGAAAAATTGCTAAAGAGAGAAGCATAGATGACCATC TGTATGCTGACAACGATAAATATGTCACAAATGCCTACAAGAGGAAACTTGCTGAACGTAACCAGTGGCTGGAAGAAGAAAAGCTCCGTGAACTCAAAGA GCAGAAAGACGATGTTACCAAGAAGAGTGATCTGAGCGACTTCTACTTCAACCTGAACAAGAATGTTGCTTATGGTGGTAAAGATGCGGAGATGAGGAGG CTAGAGAAGCGGGCCGCCGAAGCTAACAAGGTAGGGAAGCAGGATGGATCAAAGGCAACAACATCTTCATCACTACCCGACTTGACAAAAGCATCAGGAT CTTCTTCAAACACCGAGATACTACAAGACCATGATTCTCAAAGGCATGGTGATCTGAAGCCAGAATCTGATAAGCCTGTCTCGGAGCCAACGACTGCTAA GGAAGCTAATCCTGACCATAATAATAAGAGAAAGGAAGATGCAATCAATGCAGCGAAAGAGCGTATGTTGGCACGCAAGAGAGCAAAGCTGCAGCAGCAA CTAGAAGAGATGTAG
AA sequence Show only first row Show all	>Lus10020557 pacid=23172282 polypeptide=Lus10020557 locus=Lus10020557.g ID=Lus10020557.BGIv1.0 annot-version=v1.0 MKKYGLQLRVQPSQHKKPPRPPPPKLLGFMNDDGDEDEDNVERDIARQATKTKSHKDIEEQHKKALEEDPSVFDYDGVYDEMKQKIVRPRIEDKEQKKSK YIETLKAKAIERERQQEIVYERKIAKERSIDDHLYADNDKYVTNAYKRKLAERNQWLEEEKLRELKEQKDDVTKKSDLSDFYFNLNKNVAYGGKDAEMRR LEKRAAEANKVGKQDGSKATTSSSLPDLTKASGSSSNTEILQDHDSQRHGDLKPESDKPVSEPTTAKEANPDHNNKRKEDAINAAKERMLARKRAKLQQQ LEEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27285			Coiled-coil domain-containing ...		Lus10020557 [exp]	0	1
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10003690 [exp]	6.2	0.7985
AT1G69630			F-box/RNI-like superfamily pro...		Lus10002239 [exp]	6.6	0.7903
AT4G39100		SHL1	short life, PHD finger family ...		Lus10028801 [exp]	12.0	0.7469
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10008356 [exp]	12.5	0.7690
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	15.7	0.7674
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10011940 [exp]	16.3	0.7701
AT3G54630			unknown protein		Lus10030643 [exp]	16.5	0.7055
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10030764 [exp]	17.0	0.7344
AT1G02330			unknown protein		Lus10042403 [exp]	18.2	0.7435
AT2G31440			unknown protein		Lus10027036 [exp]	20.3	0.7222

Compare expression of checked genes

Lus10020557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.