Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18770 54 / 5e-10 RING/U-box superfamily protein (.1) AT1G18760 54 / 2e-09 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G18780 54 / 2e-09 RING/U-box superfamily protein (.1) AT2G29840 54 / 4e-09 RING/U-box superfamily protein (.1) AT3G46620 51 / 4e-08 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G21960 50 / 4e-08 RING/U-box superfamily protein (.1) AT3G13228 50 / 5e-08 RING/U-box superfamily protein (.1) AT1G74620 50 / 6e-08 RING/U-box superfamily protein (.1) AT5G59550 50 / 1e-07 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G19950 50 / 1e-07 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006279 [exp] 155 / 5e-48 AT1G18760 62 / 2e-11 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10034793 [exp] 106 / 1e-29 AT5G59550 48 / 9e-07 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10007628 [exp] 92 / 6e-23 AT4G12140 60 / 2e-10 RING/U-box superfamily protein (.1) Lus10012376 [exp] 86 / 9e-22 AT3G46620 60 / 3e-11 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028009 [exp] 79 / 3e-19 AT5G59550 57 / 5e-10 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10033682 [exp] 66 / 6e-14 AT3G19950 67 / 5e-13 RING/U-box superfamily protein (.1) Lus10017722 [exp] 64 / 3e-13 AT3G19950 64 / 5e-12 RING/U-box superfamily protein (.1) Lus10030464 [exp] 61 / 6e-12 AT1G26800 181 / 3e-57 RING/U-box superfamily protein (.1) Lus10012819 [exp] 59 / 3e-11 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118000 [exp] 59 / 3e-11 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.007G107000 [exp] 59 / 5e-11 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.001G103900 [exp] 55 / 1e-09 AT4G26400 85 / 2e-19 RING/U-box superfamily protein (.1.2) Potri.010G168300 [exp] 50 / 4e-08 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.002G083001 [exp] 50 / 7e-08 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.005G062400 [exp] 49 / 9e-08 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.013G116000 [exp] 49 / 1e-07 AT3G30460 61 / 2e-11 RING/U-box superfamily protein (.1) Potri.008G087200 [exp] 49 / 1e-07 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.016G082500 [exp] 49 / 2e-07 AT5G02750 176 / 1e-53 SHOOT GRAVITROPISM 9, RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 47 / 1e-06 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020558 pacid=23172325 polypeptide=Lus10020558 locus=Lus10020558.g ID=Lus10020558.BGIv1.0 annot-version=v1.0 ATGACGCCACGTCTGCAATTGGTGACAGAATTCCATCTAGCAGAGGAAACGGCGGTGGTGATGCCACCTCCTCAGGCGGCGCGTGGGCAAAGGAGGAGGC GATTCCGTTACGTACGAGAAGAATTCGCGGCCGAATTCCGTGATCAGAGGGAGGCGGTGGTGGCGGAATCCGCCGAAGAATACGAGATGAGGACTACCGG CGCTTCGGAATTGGCAATTCAGAAGCTGGAGAGGGTGGAGATCGGCTGCGGGTGCGGCGGAGAGTGGAAACAGGGTGATTGCTGCACAATTTGTCTTGAG GAGATGGGTTCCGGCGAAGGAAAGGTGATAAGGTTTGATTGCAAGCATGAGTTCAATGGAAGTTTCTTGATTACTTGGCTTCAGCAATCGAATTGCTGCC CATTGTGCCGATTTCAGATTCCAGGTTCATAG
AA sequence Show only first row Show all	>Lus10020558 pacid=23172325 polypeptide=Lus10020558 locus=Lus10020558.g ID=Lus10020558.BGIv1.0 annot-version=v1.0 MTPRLQLVTEFHLAEETAVVMPPPQAARGQRRRRFRYVREEFAAEFRDQREAVVAESAEEYEMRTTGASELAIQKLERVEIGCGCGGEWKQGDCCTICLE EMGSGEGKVIRFDCKHEFNGSFLITWLQQSNCCPLCRFQIPGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18760			Zinc finger, C3HC4 type (RING ...		Lus10020558 [exp]	0	1
					Lus10025095 [exp]	11.9	0.6874
AT3G06330			RING/U-box superfamily protein...		Lus10012793 [exp]	14.5	0.6568
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10003012 [exp]	17.0	0.6793
AT1G28030			2-oxoglutarate (2OG) and Fe(II...		Lus10012760 [exp]	21.0	0.6770
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	25.8	0.6641
					Lus10023587 [exp]	28.8	0.6641
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Lus10027855 [exp]	31.6	0.6641
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	34.1	0.6641
					Lus10021782 [exp]	36.4	0.6641
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10031542 [exp]	38.7	0.6641

Compare expression of checked genes

Lus10020558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.