Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18010 521 / 0 Major facilitator superfamily protein (.1) AT1G18000 521 / 0 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006288 [exp] 774 / 0 AT1G18010 649 / 0.0 Major facilitator superfamily protein (.1) Lus10019528 [exp] 643 / 0 AT1G18010 659 / 0.0 Major facilitator superfamily protein (.1) Lus10043371 [exp] 633 / 0 AT1G18010 657 / 0.0 Major facilitator superfamily protein (.1) Lus10019527 [exp] 508 / 1e-178 AT1G18010 578 / 0.0 Major facilitator superfamily protein (.1) Lus10009416 [exp] 414 / 6e-144 AT1G18010 405 / 1e-140 Major facilitator superfamily protein (.1) Lus10043370 [exp] 97 / 2e-23 AT1G18010 103 / 3e-26 Major facilitator superfamily protein (.1) Lus10009415 [exp] 46 / 6e-06 AT1G18010 108 / 1e-28 Major facilitator superfamily protein (.1) Lus10009413 [exp] 0 / 1 AT1G18010 152 / 2e-47 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005100 [exp] 584 / 0 AT1G18010 630 / 0.0 Major facilitator superfamily protein (.1) Potri.012G011000 [exp] 409 / 7e-141 AT1G18010 422 / 5e-146 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF05978 [flax] [poplar] UNC-93 Ion channel regulatory protein UNC-93
Representative CDS sequence Show only first row Show all	>Lus10020560 pacid=23172369 polypeptide=Lus10020560 locus=Lus10020560.g ID=Lus10020560.BGIv1.0 annot-version=v1.0 ATGGGAACCGCCAGCATTGACCAGGAATCCGGCGTCGTCGCCGCCGCCGGGAAATCCCGATTCCGATACAACTCGCCCTTGGTGCAATCGACCCCACCGC CGCCAACAACGCCAACACCGCCTTATACACCACCTACCCCCGCCCTCTACACCACCTTCGCCGTCTTCGGAGTCCTCGGCGGCGGCTTCTACAACATCCT CGGCCCTCGCCTCACCCTCGCTGCGGGTTGCTCCACCTACGTGCTCTACGCCGGCTCTTTCCTTTATTATAACCATTACAAGCACCAGGTGTTCGCCATC GTCGCCGGCGCGATTCTCGGTGTCGGCGCTGGGTTCCTCTGGGCAGGTCAGGGAGCGATCATGACGTCATACCCGCCGCCGAACCGGAAAGGAACGTACA TATCCCTCTTCTGGTCAATCTTTAACACCGGCGGGGTCATCGGTGGGCTAATCCCCTTCGCTTTAAACTACCATAGCTCCGCCCCTTCAGTCAGCGACGG GACCTACATCGGATTCATCATCTTCATGTCCATCGGAACCTTACTATCCTTCGCAATCCTCCCGCCGGCGAAGGTAATCCGCGACGACGGCAGCCAATGC ACCCAAATCAAATACTCTAAAGTCTCCACAGAAGCGCTCGAAATCCTCAAGCTGTTCGGAAATTGGCGGATGCTACTCATCGCTCCGGCCGCCTGGGCGT CCAATTTCTTCTACACTTACCAATTCAACAACGTCAACGCTGCCCGATTCAACGTCAGAACTAGGGGGTTGAACAACGTCTTCTATTGGGGTGCTCAGAT GATCGGATCTTTCGCGATCGGGTACGTGTTGGATTTCACATTCAAGAGTAGGAGAAACAGGGGATTCCTAGGGATTGCCATTATCGGGGTTTTGGGTACC GGAATTTGGGGCGGCGGATTGGCTGATCAATTGGGGTACTCGTTCGAGAAAATGCCGGAGAAGCTAGATTTCAAAAACTCCGGTGGGAAGTTCGCCGGTC CGTTCGTGTTGTATTTCGGCTACGGGTTCCTGGATGCGGTTTTTCAAAGTACGGTTTATTGGGTGATCGGAGCGCTGGCGAATGATTCGGAAATTCTGAG TCGGTACGTTGGTTTCTATAAGGGAGTTCAGAGTGCCGGAGCGGCAGTGGCGTGGCAGATGGATACAAAGAAAGTTCCGATGATTAGGCAGTTGGTAGTG AACTGGGTTTTAACGACGGTGAGCTATCCGTTGCTAGCGATTCTGGTGGCGTATGCAGTGAAGGATGAGGATAGTGATGACGGCGTTAAGGGGGAGGATG GAATTGTGAAGGCGGGTGGTTTGGGTGGTGAATTTGGTAACTTGGCGGATGATGGTAAGGTTAACAAGCCGGTCTAG
AA sequence Show only first row Show all	>Lus10020560 pacid=23172369 polypeptide=Lus10020560 locus=Lus10020560.g ID=Lus10020560.BGIv1.0 annot-version=v1.0 MGTASIDQESGVVAAAGKSRFRYNSPLVQSTPPPPTTPTPPYTPPTPALYTTFAVFGVLGGGFYNILGPRLTLAAGCSTYVLYAGSFLYYNHYKHQVFAI VAGAILGVGAGFLWAGQGAIMTSYPPPNRKGTYISLFWSIFNTGGVIGGLIPFALNYHSSAPSVSDGTYIGFIIFMSIGTLLSFAILPPAKVIRDDGSQC TQIKYSKVSTEALEILKLFGNWRMLLIAPAAWASNFFYTYQFNNVNAARFNVRTRGLNNVFYWGAQMIGSFAIGYVLDFTFKSRRNRGFLGIAIIGVLGT GIWGGGLADQLGYSFEKMPEKLDFKNSGGKFAGPFVLYFGYGFLDAVFQSTVYWVIGALANDSEILSRYVGFYKGVQSAGAAVAWQMDTKKVPMIRQLVV NWVLTTVSYPLLAILVAYAVKDEDSDDGVKGEDGIVKAGGLGGEFGNLADDGKVNKPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18010			Major facilitator superfamily ...		Lus10020560 [exp]	0	1
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	3.2	0.9091
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039550 [exp]	3.5	0.9065
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10024172 [exp]	3.5	0.8986
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008668 [exp]	4.0	0.8748
AT1G57790			F-box family protein (.1)		Lus10013738 [exp]	4.6	0.8759
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	5.5	0.8941
AT4G00170			Plant VAMP (vesicle-associated...		Lus10036495 [exp]	8.1	0.8482
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10024569 [exp]	8.3	0.9012
AT4G18060			SH3 domain-containing protein ...		Lus10015253 [exp]	9.4	0.8619
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Lus10013362 [exp]	11.5	0.8505

Compare expression of checked genes

Lus10020560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.