Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36430 86 / 5e-20 Plant protein of unknown function (DUF247) (.1) AT5G22550 79 / 2e-17 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT5G22540 71 / 1e-14 Plant protein of unknown function (DUF247) (.1) AT3G47250 70 / 3e-14 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G47200 69 / 5e-14 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT5G22560 68 / 1e-13 Plant protein of unknown function (DUF247) (.1) AT3G44710 67 / 3e-13 Plant protein of unknown function (DUF247) (.1) AT3G47210 65 / 1e-12 Plant protein of unknown function (DUF247) (.1) AT4G31980 49 / 5e-07 unknown protein AT3G50150 43 / 3e-05 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020563 [exp] 192 / 1e-61 AT3G47250 204 / 2e-62 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) Lus10020562 [exp] 105 / 2e-29 AT3G44710 139 / 4e-40 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 81 / 6e-18 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 76 / 2e-16 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10035569 [exp] 76 / 2e-16 AT2G36430 427 / 2e-147 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 72 / 3e-15 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 60 / 9e-11 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 58 / 3e-10 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10018320 [exp] 52 / 5e-08 AT3G50120 210 / 2e-61 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G187100 [exp] 108 / 6e-28 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 93 / 1e-22 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 89 / 5e-21 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.013G146300 [exp] 62 / 1e-11 AT4G31980 217 / 1e-63 unknown protein Potri.019G108400 [exp] 62 / 2e-11 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.001G333000 [exp] 60 / 7e-11 AT3G50160 237 / 8e-73 Plant protein of unknown function (DUF247) (.1) Potri.004G185501 [exp] 58 / 2e-10 AT2G36430 266 / 2e-83 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 57 / 8e-10 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.013G146600 [exp] 56 / 2e-09 AT4G31980 236 / 1e-70 unknown protein Potri.013G146400 [exp] 55 / 2e-09 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10020561 pacid=23172275 polypeptide=Lus10020561 locus=Lus10020561.g ID=Lus10020561.BGIv1.0 annot-version=v1.0 ATGGAAACCGATGACCCGGTCTTCAACGTGTCATGGATGTTGTCGTTCATAATGCGGGACCTGCTCCGTTTTGAGAATCAAGTCCCGATCTTCATCCTGA AATCTCTTTACTCGATCGCGATTATGGACAATCCGGTCGAAGAGGGGGAAGAACCTCGTCCATCTTTGACCGAACTGGCTTTGAAGTTCTTCGATCACGG ATTCAAGAGATCAGAGGAGGTACTCAAGAAGTACAAGGATGTCGAGGGGAAGCATCTCCTCGACTTGTTTCGACGGACATTCATTCCGGAAGGACGGGAA GAAAGTAGTCGAAACAACAGTGAGTTCCTCCACCTGCCGCAGTCTGTGAGAAAAGCAGTGCTACGCACACTGCTCGAACCACGTCACCATCTACACGGCG TTGGTTGGGTCGCTGATCAACAACGTGGAAGATGCGGAGTATCTCTCGAACCGCAAGATTCTGGAGAACTGCTTGGGGACGGACGAGGAAGTGACGAGGC TGTTTAA
AA sequence Show only first row Show all	>Lus10020561 pacid=23172275 polypeptide=Lus10020561 locus=Lus10020561.g ID=Lus10020561.BGIv1.0 annot-version=v1.0 METDDPVFNVSWMLSFIMRDLLRFENQVPIFILKSLYSIAIMDNPVEEGEEPRPSLTELALKFFDHGFKRSEEVLKKYKDVEGKHLLDLFRRTFIPEGRE ESSRNNSEFLHLPQSVRKAVLRTLLEPRHHLHGVGWVADQQRGRCGVSLEPQDSGELLGDGRGSDEAV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36430			Plant protein of unknown funct...		Lus10020561 [exp]	0	1
AT3G44710			Plant protein of unknown funct...		Lus10020562 [exp]	1.0	0.9823
AT3G50920			Phosphatidic acid phosphatase ...		Lus10028327 [exp]	1.4	0.9741
AT3G47250			Plant protein of unknown funct...		Lus10020563 [exp]	4.5	0.9686
AT1G64820			MATE efflux family protein (.1...		Lus10009140 [exp]	5.2	0.9448
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Lus10003435 [exp]	6.3	0.9606
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	7.5	0.9693
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10033867 [exp]	10.1	0.9583
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	12.4	0.9578
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10008840 [exp]	15.5	0.9563
AT5G06730			Peroxidase superfamily protein...		Lus10008174 [exp]	15.7	0.9191

Compare expression of checked genes

Lus10020561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.