Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44710 134 / 6e-38 Plant protein of unknown function (DUF247) (.1) AT3G50150 128 / 7e-36 Plant protein of unknown function (DUF247) (.1) AT5G22550 125 / 8e-35 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT5G22540 124 / 1e-34 Plant protein of unknown function (DUF247) (.1) AT2G36430 121 / 2e-33 Plant protein of unknown function (DUF247) (.1) AT3G50120 121 / 4e-33 Plant protein of unknown function (DUF247) (.1) AT3G50170 120 / 6e-33 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT5G22560 120 / 7e-33 Plant protein of unknown function (DUF247) (.1) AT3G50160 117 / 9e-32 Plant protein of unknown function (DUF247) (.1) AT3G47200 116 / 2e-31 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035568 [exp] 134 / 4e-38 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 130 / 1e-36 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 120 / 1e-32 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 114 / 9e-31 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10020561 [exp] 106 / 5e-30 AT2G36430 86 / 5e-20 Plant protein of unknown function (DUF247) (.1) Lus10035569 [exp] 103 / 1e-26 AT2G36430 427 / 2e-147 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 97 / 1e-24 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 94 / 4e-23 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 94 / 4e-23 AT4G31980 251 / 5e-76 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G187100 [exp] 169 / 2e-51 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 142 / 4e-41 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 116 / 1e-31 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 116 / 3e-31 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.003G159300 [exp] 96 / 5e-24 AT3G50120 268 / 6e-84 Plant protein of unknown function (DUF247) (.1) Potri.003G159400 [exp] 94 / 2e-23 AT3G50120 294 / 1e-94 Plant protein of unknown function (DUF247) (.1) Potri.001G046000 [exp] 94 / 2e-23 AT4G31980 232 / 3e-69 unknown protein Potri.001G071300 [exp] 92 / 9e-23 AT3G50120 293 / 7e-94 Plant protein of unknown function (DUF247) (.1) Potri.001G071400 [exp] 90 / 6e-22 AT3G50120 292 / 3e-93 Plant protein of unknown function (DUF247) (.1) Potri.004G185501 [exp] 89 / 1e-21 AT2G36430 266 / 2e-83 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10020562 pacid=23172349 polypeptide=Lus10020562 locus=Lus10020562.g ID=Lus10020562.BGIv1.0 annot-version=v1.0 ATGAACCTGGTGGCGTTCGAGCAGTGCTACGCACACTGCTCGAACCACGTCACCATCTACACGGCGTTGGTTGGGTCGCTGATCAACAACGTGGAAGATG CGGAGTATCTCTCGAACCGCAAGATTCTGGAGAACTGCTTGGGGACGGACGAGGAAGTGACGAGGCTGTTTAATGAGTTGGGGAAGGACGTGGTGACGGA TTTGCAGACAGCATATTTAGGCGAGGTGCTCGAGGAAGTGAACCGTTATTGCGGTAGCAATTGGAATGTGGGATGGTCTGGATTCAAACTGACGTATTTC GAATCTCCTTGGTCGTTCATCTCTGCCTCGGCGGTTGGTTTGGCTCTTGTTCTCACTTTCCTTCAGACATTTTTCGCCGTTTATGGTTACTACCGGCCGG CGTGA
AA sequence Show only first row Show all	>Lus10020562 pacid=23172349 polypeptide=Lus10020562 locus=Lus10020562.g ID=Lus10020562.BGIv1.0 annot-version=v1.0 MNLVAFEQCYAHCSNHVTIYTALVGSLINNVEDAEYLSNRKILENCLGTDEEVTRLFNELGKDVVTDLQTAYLGEVLEEVNRYCGSNWNVGWSGFKLTYF ESPWSFISASAVGLALVLTFLQTFFAVYGYYRPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44710			Plant protein of unknown funct...		Lus10020562 [exp]	0	1
AT2G36430			Plant protein of unknown funct...		Lus10020561 [exp]	1.0	0.9823
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	1.7	0.9811
AT3G47250			Plant protein of unknown funct...		Lus10020563 [exp]	2.0	0.9797
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	2.0	0.9812
AT3G50920			Phosphatidic acid phosphatase ...		Lus10028327 [exp]	5.7	0.9662
AT1G70840		MLP31	MLP-like protein 31 (.1)		Lus10020497 [exp]	5.9	0.9676
AT3G22490			Seed maturation protein (.1)		Lus10022058 [exp]	6.5	0.9699
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	7.7	0.9649
AT2G23450			Protein kinase superfamily pro...		Lus10011652 [exp]	7.7	0.9709
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034475 [exp]	8.1	0.9647

Compare expression of checked genes

Lus10020562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.