Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47250 204 / 2e-62 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT2G36430 196 / 7e-60 Plant protein of unknown function (DUF247) (.1) AT3G47200 196 / 2e-59 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47210 196 / 2e-59 Plant protein of unknown function (DUF247) (.1) AT5G22540 186 / 6e-56 Plant protein of unknown function (DUF247) (.1) AT5G22550 182 / 4e-54 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G44710 176 / 1e-51 Plant protein of unknown function (DUF247) (.1) AT5G22560 164 / 5e-47 Plant protein of unknown function (DUF247) (.1) AT3G50120 135 / 3e-36 Plant protein of unknown function (DUF247) (.1) AT3G50150 130 / 9e-35 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020561 [exp] 212 / 2e-69 AT2G36430 86 / 5e-20 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 216 / 4e-67 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10035569 [exp] 214 / 1e-66 AT2G36430 427 / 2e-147 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 214 / 2e-66 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 208 / 5e-64 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 133 / 2e-35 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 130 / 9e-35 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 127 / 8e-34 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10017132 [exp] 123 / 5e-32 AT3G50120 157 / 6e-42 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G187100 [exp] 278 / 2e-91 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 221 / 2e-69 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 208 / 3e-64 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.004G185501 [exp] 142 / 8e-39 AT2G36430 266 / 2e-83 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 132 / 4e-35 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.010G144200 [exp] 129 / 1e-34 AT3G50140 245 / 7e-76 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 127 / 9e-34 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 122 / 5e-32 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.013G146400 [exp] 123 / 7e-32 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.003G181800 [exp] 121 / 1e-31 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10020563 pacid=23172278 polypeptide=Lus10020563 locus=Lus10020563.g ID=Lus10020563.BGIv1.0 annot-version=v1.0 ATGAGTACCACGGCGGCTGGAAACGGCGGCGACCACGCGATCAACATCATTACTCCGGCGGCACAGTCCATAGACAAAAGATGGTTAGATTCAGTGGAGG CAAAGATGAAGAATCGATCCGCAGATCCAACTCTGCTGAAAAGGACAGCAGGCAGAGCATCCTGTTGCATCTTCAGAATTCCTCAAACCCTAATCGAAAT GAATCCTAAAGCGTACCATCCGACCACAGTCTCCATCGGTCCTTACCACCACGGCAAATCCCACTTGGAGACCATCCAGCAGCACAAATGGCGGTTCCTC CAAGCAATCGTTGACCGGATCGTCCAACCAAACGGTCTTAACCGGTTGTTCACAGCCGTGGCGGATAGGGAAGACGATATCAGAGATTCCTACTCGGAGA GCACCAAGGATTTCGGAAGTCGAGAGTTGGTGGAGATGATCGTTCTCGACGGATGCTTCGTAATCGAGTTGTTCTCGATCGTCGGAGGGGTCGTCAGGAT GGAAACCGATGACCCGGTCTTCAACTTGTCATGGATGTTGTCGTTCATAATGCGGGACCTGCTCCGTCTTGAGAATCAGGTCCCGATCTTCGTCCTGAAA TCTCTTTACTCGATCGCGATTCTGGACAGTCCGGTCAAAGAAGGGGAAGAACCTCGTCCATCTTTGACCGAACTGGCTTTGAAGTTCTTTGATCACGGAT TCGAGAGATCAGAGGAGGTACTCAAAAAGTACAAGGATGTCGAGGGGAAGCATCTCCTCGACTTGTTTCGACGGACTTTCATTCCGGAAGGACGGGAAGA AAGTTGTCGAAACAACAGCGAGTTCTGA
AA sequence Show only first row Show all	>Lus10020563 pacid=23172278 polypeptide=Lus10020563 locus=Lus10020563.g ID=Lus10020563.BGIv1.0 annot-version=v1.0 MSTTAAGNGGDHAINIITPAAQSIDKRWLDSVEAKMKNRSADPTLLKRTAGRASCCIFRIPQTLIEMNPKAYHPTTVSIGPYHHGKSHLETIQQHKWRFL QAIVDRIVQPNGLNRLFTAVADREDDIRDSYSESTKDFGSRELVEMIVLDGCFVIELFSIVGGVVRMETDDPVFNLSWMLSFIMRDLLRLENQVPIFVLK SLYSIAILDSPVKEGEEPRPSLTELALKFFDHGFERSEEVLKKYKDVEGKHLLDLFRRTFIPEGREESCRNNSEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47250			Plant protein of unknown funct...		Lus10020563 [exp]	0	1
AT3G44710			Plant protein of unknown funct...		Lus10020562 [exp]	2.0	0.9797
AT3G22490			Seed maturation protein (.1)		Lus10022058 [exp]	3.0	0.9727
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	4.0	0.9758
AT2G36430			Plant protein of unknown funct...		Lus10020561 [exp]	4.5	0.9686
AT3G53400			unknown protein		Lus10026502 [exp]	4.6	0.9668
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	5.3	0.9715
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10004705 [exp]	6.3	0.9453
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	6.9	0.9674
AT1G03620			ELMO/CED-12 family protein (.1...		Lus10039805 [exp]	7.3	0.9571
AT5G63970			Copine (Calcium-dependent phos...		Lus10020885 [exp]	8.4	0.9485

Compare expression of checked genes

Lus10020563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.