Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03860 955 / 0 MLS malate synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006282 [exp] 1060 / 0 AT5G03860 874 / 0.0 malate synthase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G092000 [exp] 994 / 0 AT5G03860 969 / 0.0 malate synthase (.1.2) Potri.012G094532 [exp] 372 / 3e-126 AT5G03860 374 / 9e-128 malate synthase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF01274 [flax] [poplar] Malate_synthase Malate synthase
Representative CDS sequence Show only first row Show all	>Lus10020565 pacid=23172314 polypeptide=Lus10020565 locus=Lus10020565.g ID=Lus10020565.BGIv1.0 annot-version=v1.0 ATGTTGGGATACACTACTCACATCAACTCTGCTCCTGGCACCGGTAAGAGGAGGATCACCGTCGGAGGAGGAGCTTATGACGCTCCTGACGGAGTAGACA TTCGCGGCCGTTATGACCAGGAATTCGCTAAGATACTCACCGTCGATGCACTCCAGTTTGTCGCCGACCTCCAGAGGGAGTTCCGGGACCGCATCAAGTT CGCGCTCGATTGTCGCCGTGAAGCCAAGGCCAAGTACAATGCTGGCGGGCTTCCTGGGTTTGACCCGGCTACCCGTTTCGTTCGAGATAGCGAATGGTCG TGTGCTCCTGTGCCCTCTGCGGTTGCTGACCGGAGAGTCGAGATTACTGGCCCTGTTGAGAGGAAGATGATCATCAACGCCCTTAACTCTGGCGCCAAAG TTTTCATGGCCGATTTCGAAGATGCTCTGTCGCCAACGTGGGAGAATCTGATGAGAGGGCAAGTAAACTTGAAAGACGCAGTTGATGGAATAATAACCTT CGAGGACAAAGCTAGGAATAGGGTTTACAAGTTGAATGATCAAACAGCCAAACTGTTTGTTCGTCCCAGAGGATGGCACTTGCCAGAGGCACACATCTTC ATCGACGGCCAACCCGCAACCGGCTGTTTGGTCGATTTTGGCCTCTACTTCTACCACAATTACGCCAACTTCCGCAAGACACAAGGCGAAGGGTTCGGAC CATTCTTCTACCTCCCGAAAATGGAACACTCGAGGGAGGCAAAGATATGGAACTGTGTGTTCGAGAGAGCAGAGAAGATAGCCGGTATGGAAAGGGGAAG CATCAGGGCTACCGTTCTGATAGAGACCCTTCCGGCTGTGTTCCAGATGAACGAGATACTGTACGAGCTGAGAGACCACTCCGTCGGGCTCAATTGTGGG AGATGGGATTACATCTTTAGCTACGTCAAGACTTTCCAGTCTCACCCTGACAGACTCCTTCCCGACCGATTTCAAGTCGGCATGACTCAGCACTTCATGA GGAGCTACTCTGAGCTCCTCATCTCCACCTGTCATAAGCGTGGCGTCCACGCCATGGGAGGCATGGCTGCCCAGATTCCAATCCGGGACGACCGAGAAGC GAACGAGGCAGCTGTAGAGCTGGTAAGGAAGGACAAGCTCCGAGAAGTGATGGCAGGACACGACGGGACATGGGCGGCCCATCCAGGGCTAATCCCGGCA TGCATGGAAGTGTTCACAAACATAATGGGGAACTCCCCCAACCAAATAAACACAAGAAAACGAGAAGACGCATCAGGAATCACAGAAGAAGACCTGCTCC AGCATCCTCGAGGAGCGAGGACAATGGAAGGTCTTCGGCTCAACACCAGGGTGGGAATCCAATATGTGGCGGCCTGGCTGACCGGAACAGGGTCAGTGCC GCTGTACAACCTGATGGAGGATGCAGCGACCGCGGAGATAAGCAGGGTTCAGAACTGGCAGTGGGTTAAGTATGGTGTTGAGCTCGACGGAGATGGGTTA GGGGTGAGAGTCAACCGGGAGGTGTTGTGGAGGGTTGTGGAGGAAGAGATGGGGAGGATTGAGAAGGAAGTTGGTAAGGATAAGTTCAAGAAGGGGATGT ATAAGGAGGCTAGCAAGATATTCGCAAGGCAGTGTACTTCGGAGAGGCTCGATGATTTCTTGACGCTGGATGCTTATAATCACATTGTTGTTCATTTCCC AAAGGCTACTGCTTCCAGGCTTTGA
AA sequence Show only first row Show all	>Lus10020565 pacid=23172314 polypeptide=Lus10020565 locus=Lus10020565.g ID=Lus10020565.BGIv1.0 annot-version=v1.0 MLGYTTHINSAPGTGKRRITVGGGAYDAPDGVDIRGRYDQEFAKILTVDALQFVADLQREFRDRIKFALDCRREAKAKYNAGGLPGFDPATRFVRDSEWS CAPVPSAVADRRVEITGPVERKMIINALNSGAKVFMADFEDALSPTWENLMRGQVNLKDAVDGIITFEDKARNRVYKLNDQTAKLFVRPRGWHLPEAHIF IDGQPATGCLVDFGLYFYHNYANFRKTQGEGFGPFFYLPKMEHSREAKIWNCVFERAEKIAGMERGSIRATVLIETLPAVFQMNEILYELRDHSVGLNCG RWDYIFSYVKTFQSHPDRLLPDRFQVGMTQHFMRSYSELLISTCHKRGVHAMGGMAAQIPIRDDREANEAAVELVRKDKLREVMAGHDGTWAAHPGLIPA CMEVFTNIMGNSPNQINTRKREDASGITEEDLLQHPRGARTMEGLRLNTRVGIQYVAAWLTGTGSVPLYNLMEDAATAEISRVQNWQWVKYGVELDGDGL GVRVNREVLWRVVEEEMGRIEKEVGKDKFKKGMYKEASKIFARQCTSERLDDFLTLDAYNHIVVHFPKATASRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03860		MLS	malate synthase (.1.2)		Lus10020565 [exp]	0	1
AT4G26400			RING/U-box superfamily protein...		Lus10043027 [exp]	1.7	0.9800
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10004225 [exp]	1.7	0.9745
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10022441 [exp]	4.0	0.9720
AT5G46060			Protein of unknown function, D...		Lus10013943 [exp]	4.5	0.9715
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	4.7	0.9760
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	4.9	0.9665
AT2G27480			Calcium-binding EF-hand family...		Lus10043389 [exp]	5.3	0.9643
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10036579 [exp]	6.7	0.9603
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Lus10014480 [exp]	7.9	0.9509
					Lus10033259 [exp]	9.1	0.9304

Compare expression of checked genes

Lus10020565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.