Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22430 105 / 3e-24 unknown protein AT1G78810 48 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006278 [exp] 716 / 0 AT3G22430 132 / 2e-32 unknown protein Lus10021918 [exp] 92 / 3e-20 AT3G22430 298 / 6e-97 unknown protein Lus10041203 [exp] 44 / 3e-05 AT3G22430 186 / 2e-57 unknown protein Lus10021917 [exp] 41 / 0.0003 AT3G22430 125 / 2e-34 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G147201 [exp] 328 / 7e-102 AT3G22430 148 / 3e-37 unknown protein Potri.010G235700 [exp] 217 / 2e-62 AT3G22430 125 / 4e-30 unknown protein Potri.008G024500 [exp] 192 / 1e-53 AT3G22430 127 / 1e-30 unknown protein Potri.008G152900 [exp] 137 / 1e-35 AT3G22430 409 / 2e-138 unknown protein Potri.010G087400 [exp] 123 / 1e-30 AT3G22430 418 / 3e-142 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10020567 pacid=23172351 polypeptide=Lus10020567 locus=Lus10020567.g ID=Lus10020567.BGIv1.0 annot-version=v1.0 ATGCCAGAAGACTTGGAAGAACTGAGGCATGGGAAGGAGGGTTATAATCCATTGGTGGTATCTCCACATTTCCAGCCAACAGGACAAATGCATCCAAGCA AGCGTTTCAAAGCTTCGAAAGGAAATATAGTGAATCGATTGGGGCCTGTTGCTGCTCAAAGTGTAAAGCAGCGATTGGGACCGAGGTTGGTTCCTCCTGG TCGTAGTTCAAAGCAAGGATCTTCCCATGTTAAACAACGGTTGGGACCTGCCTTTCAACCAGGGAAGAAGAACTCTGGAGATGATCGAAATGCTGCGAAG GTGCCGCCCTGGTTGAAGGCTCGGGATAAAGGACAGCAGCAGAGGGTTTCTAATGAAACGGCCTCAAGTGCTAAAGGTTCCAAATCTTTGGCAGTGAAAG AGAAAGATACAAAGAAGACTGAGCCTCAGGAGGATTCCGAGGAGTTTATTCAGCTGGTGAATACTGCTTTCTTCAAGCTGACCAAGTCGTTGAATGAGAA TTCAGCCATAAGGAGAAAGTACACGGAGCAAGATGGAGCTGGAGGTTTGAGATGCAGTGTATGTGGCAGCGACTCAAAAGATTTCACGGACACGCTGAGC TTGGCACAGCATGCCTGCACGTCTACCAAAGCAGGTTTCAGAGCGGAGCATTTGGGTTTTCACAAGGCACTTTGCTTGCTGATGGGTTGGAAGTGGGACA TACGCGATGTCGTAAAGGGTCCTTGGGTAAGGCAGAAATTGAGCGACGATGAAGCTTCGTCATTGAACGATGACCTTATACTCTGGCCGCCTGTTGTAGT CATTCATAACAGCTCAATATCGAGTGAAAATCACAACGAACGTATCATTGTAAGAATCGAAGACCTCCGATCCGCCCTCAAAGGCAAGGGATTCCAAGAC TCGATAAACAACATCTGCAGAGGCAAAGCTGCAAACCACAGCGTCATGGTAGTAAGTTTCGCGGCCACCTTCTCCGGTCTACAAGAGGCCGAGAAGCTTC ACAGACTTTACTCCGACAACAAACACGGGAGGTCAGAGTTCCAACAAATTGGCACAACCACCAATGGAGGCGATGATGGTGACAAGAGAACGGTGGTGGA AGAAGGCGAGCATAACGAGGAAGCAGCTGAAGCAGTACTATATGGGTTTCTTGGGATCGCATCAGACTTGGATAAACTGGATTTTGAGATGAAGAAGAGG TGTGTGGTGAAGAGCAAGAAGGAGATTGATGCCATTGCAGATGCCACTTTGGAGAGGGTTGACAAAGGTTGA
AA sequence Show only first row Show all	>Lus10020567 pacid=23172351 polypeptide=Lus10020567 locus=Lus10020567.g ID=Lus10020567.BGIv1.0 annot-version=v1.0 MPEDLEELRHGKEGYNPLVVSPHFQPTGQMHPSKRFKASKGNIVNRLGPVAAQSVKQRLGPRLVPPGRSSKQGSSHVKQRLGPAFQPGKKNSGDDRNAAK VPPWLKARDKGQQQRVSNETASSAKGSKSLAVKEKDTKKTEPQEDSEEFIQLVNTAFFKLTKSLNENSAIRRKYTEQDGAGGLRCSVCGSDSKDFTDTLS LAQHACTSTKAGFRAEHLGFHKALCLLMGWKWDIRDVVKGPWVRQKLSDDEASSLNDDLILWPPVVVIHNSSISSENHNERIIVRIEDLRSALKGKGFQD SINNICRGKAANHSVMVVSFAATFSGLQEAEKLHRLYSDNKHGRSEFQQIGTTTNGGDDGDKRTVVEEGEHNEEAAEAVLYGFLGIASDLDKLDFEMKKR CVVKSKKEIDAIADATLERVDKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22430			unknown protein		Lus10020567 [exp]	0	1
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10013871 [exp]	17.0	0.8932
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10011685 [exp]	18.1	0.8925
AT1G77030			hydrolases, acting on acid anh...		Lus10018941 [exp]	28.0	0.8855
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Lus10002171 [exp]	29.3	0.8759
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	29.9	0.8902
AT3G16080			Zinc-binding ribosomal protein...		Lus10037549 [exp]	34.2	0.8839
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10014792 [exp]	39.3	0.8670
AT1G09590			Translation protein SH3-like f...		Lus10017232 [exp]	45.5	0.8784
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10033666 [exp]	47.3	0.8723
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10039497 [exp]	48.4	0.8668

Compare expression of checked genes

Lus10020567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.