Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44680 758 / 0 HDA09, HDA9 histone deacetylase 9 (.1) AT4G38130 499 / 4e-175 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT5G63110 481 / 1e-168 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT5G35600 395 / 1e-135 HDA7 histone deacetylase7 (.1) AT3G44490 234 / 2e-76 HDA17 histone deacetylase 17 (.1) AT3G44660 196 / 2e-61 HDA10 histone deacetylase 10 (.1) AT1G08460 102 / 1e-23 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT3G18520 97 / 1e-21 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT5G61060 89 / 7e-19 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT5G61070 85 / 2e-17 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006274 [exp] 794 / 0 AT3G44680 756 / 0.0 histone deacetylase 9 (.1) Lus10001605 [exp] 514 / 5e-177 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10001356 [exp] 487 / 2e-170 AT4G38130 809 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10019486 [exp] 473 / 2e-165 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10043337 [exp] 422 / 6e-146 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10001850 [exp] 102 / 7e-24 AT1G08460 558 / 0.0 histone deacetylase 8 (.1) Lus10013343 [exp] 101 / 2e-23 AT1G08460 559 / 0.0 histone deacetylase 8 (.1) Lus10034689 [exp] 99 / 6e-22 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10024919 [exp] 98 / 6e-22 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G460000 [exp] 776 / 0 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.004G209800 [exp] 504 / 3e-177 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.009G170700 [exp] 501 / 4e-176 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.012G083800 [exp] 480 / 1e-168 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.015G082500 [exp] 481 / 2e-168 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.011G156250 [exp] 106 / 2e-28 AT3G44680 97 / 7e-26 histone deacetylase 9 (.1) Potri.004G092900 [exp] 94 / 2e-20 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.012G060400 [exp] 91 / 2e-19 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.009G020500 [exp] 87 / 2e-18 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.005G064200 [exp] 78 / 2e-15 AT4G33470 622 / 0.0 histone deacetylase 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [flax] [poplar] Arginase PF00850 [flax] [poplar] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Lus10020570 pacid=23172339 polypeptide=Lus10020570 locus=Lus10020570.g ID=Lus10020570.BGIv1.0 annot-version=v1.0 ATGAAGTCGAAGGACAAAATCTCCTACTTTTACGATGGGGATGTTGGCAGTGTTTACTTCGGTCCGAATCACCCGATGAAACCACACAGGCTCTGTATGA CCCACCATCTTGTTCTTTCTTATGACCTTCACAAGAAGATGGAGATTTATCGGCCACACAAGGCATACCCTGTTGAGCTAGCTCAGTTCCATTCTGCTGA TTACGTTGAGTTCTTGCACCGGATTACACCTGATACTCAGCACTTGTACAGAACTGATTTAGCAAGATATAATCTTGGAGAAGATTGCCCCGTGTTCGAG AATCTGTTTGAATTTTGTCAAATCTATGCTGGGGGGACAATAGACGCCGCTCGAAGATTGAACAATCAACTGTGTGATATTGCTATAAATTGGGCTGGTG GATTACATCATGCCAAAAAGTGCGAGGCTTCTGGATTTTGTTACATCAACGACTTGGTTCTCGGGATCTTGGAGCTTCTAAAATACCATGCTCGTGTTCT GTACATAGACATAGATGTCCATCATGGTGATGGCGTAGAGGAGGCCTTCTATTTTACTGACAGGGTGATGACTGTAAGTTTTCACAAGTTTGGAGATTTG TTCTTCCCGGGAACCGGTGATGTTAAGGAAATAGGAGAAAGAGAAGGGAAGTTCTACGCCATAAATGTTCCTCTTAGGGACGGGATAGATGACTCGAGCT TCAACCGTCTCTTTAAAACCATCATATCTAAGGTTGTAGAAATCTACCAACCTGGCGCTATAGTTCTCCAATGCGGAGCAGATTCGCTGGCTGGGGACCG TTTGGGCTGTTTCAATCTCTCGATTGATGGACATGCGGAATGTGTTAAGTTTGTGAAGAAGTTCAACATTCCTTTACTGGTTACTGGAGGTGGAGGATAT ACGAAGGAGAATGTAGCTCGATGCTGGACAGTTGAAACAGGAGTACTGCTGGATACTGAACTGCCCAATGAGATCCCCGAAAACGAGTACATAAAGTATT TCGGACCTGACTATACTTTGAAGATTCCGAGCAGATACATTGAGAATTTGAACAGTAAATCTTATCTCAGCTCCCTCAAAGTTCAAGTAATGGAGAATTT GCGGTACATTCAGCACGCTCCAAGTGTGCAGATGCAAGAGGTTCCACCGGATTTTTACATCCCAGACTTCGACGAAGATGAGCAGAACCCAGATGAACGA ATGGATCAGCATACTCGAGACAAGCAAGTCCAGCGGGACGATGAATACTACGATGGGGACAATGACAACGACCCCACAGATCGATCATGA
AA sequence Show only first row Show all	>Lus10020570 pacid=23172339 polypeptide=Lus10020570 locus=Lus10020570.g ID=Lus10020570.BGIv1.0 annot-version=v1.0 MKSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLYRTDLARYNLGEDCPVFE NLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDL FFPGTGDVKEIGEREGKFYAINVPLRDGIDDSSFNRLFKTIISKVVEIYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVKFVKKFNIPLLVTGGGGY TKENVARCWTVETGVLLDTELPNEIPENEYIKYFGPDYTLKIPSRYIENLNSKSYLSSLKVQVMENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDER MDQHTRDKQVQRDDEYYDGDNDNDPTDRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10020570 [exp]	0	1
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	1.4	0.9398
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10002689 [exp]	1.4	0.9362
AT5G61330			rRNA processing protein-relate...		Lus10020496 [exp]	2.8	0.9202
AT1G09050			unknown protein		Lus10037506 [exp]	3.9	0.9187
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10003365 [exp]	4.9	0.9183
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	7.1	0.9270
AT4G08310			unknown protein		Lus10003736 [exp]	7.5	0.9027
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10043228 [exp]	7.9	0.9111
AT1G30540			Actin-like ATPase superfamily ...		Lus10033600 [exp]	8.5	0.9093
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10032634 [exp]	9.5	0.9108

Compare expression of checked genes

Lus10020570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.