Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36350 590 / 0 Protein kinase superfamily protein (.1) AT3G52890 585 / 0 KIPK KCBP-interacting protein kinase (.1.2) AT5G03640 567 / 0 Protein kinase superfamily protein (.1) AT5G47750 544 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 524 / 2e-180 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 516 / 2e-177 D6PK D6 protein kinase (.1) AT3G27580 504 / 1e-171 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT5G40030 488 / 2e-166 Protein kinase superfamily protein (.1) AT2G44830 494 / 4e-165 Protein kinase superfamily protein (.1) AT3G12690 469 / 5e-158 AGC1.5 AGC kinase 1.5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006273 [exp] 1229 / 0 AT3G52890 604 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10035591 [exp] 602 / 0 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1) Lus10008634 [exp] 595 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10016629 [exp] 531 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 530 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 528 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 522 / 4e-178 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10042911 [exp] 512 / 9e-176 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10032185 [exp] 483 / 6e-164 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G186300 [exp] 809 / 0 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1) Potri.009G146700 [exp] 691 / 0 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.006G114900 [exp] 618 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.016G004900 [exp] 545 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 539 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 531 / 3e-180 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 521 / 4e-177 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.002G137700 [exp] 523 / 5e-177 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 488 / 2e-166 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.010G175900 [exp] 473 / 3e-159 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10020571 pacid=23172284 polypeptide=Lus10020571 locus=Lus10020571.g ID=Lus10020571.BGIv1.0 annot-version=v1.0 ATGGATGGATTCCGTAGCACGTCTGAAATAGTGGAATCGACGGAGGAAGAAGTAGACATTAATGGAAGGAAAGGTGGGAACAAATACTCTATAGAAGATG ACATCAACCGTCTTTTCGAATCGATCGAGATAAGGGCGAAGAAAGGTCATGAAGGTGGTGGCAGAGATGCTCTGCTGAAGAAAGCCATGAAGAGACCTAT GAGATCGGGGTCTTCGCCTCAAGCATCCGGGATCGGCATTTCGGAGCATGTGAGTTTGAAGCAGGCTCTGAGAGGGTTGTGCATATCACAAGCCTCGGAG ATTGCTGCTACGAAGCGATTGTCGAAACTTCCAGGTTCTTCTTCGTCTAGGAATTCGGAGGCTGGACCTATCAAAAGGTTGTACAGTACTACTGTAGTAG TCGAGGCTGATGGACCATCAGGTAATGGGAATCTGGTGGAGATCTCTCTTGTACCTGAAGCAGAATCATCATCCAGCTCTACTGAAAATGTTCTCGAATC GGGAGAGTTAGCAGATCGAAGTGATCATTCTTCGCAGTGCTTCGACACAAAGGTTTTAGACTCAGTTCAAGGTTCAAGTCATTCTGTTGCAGAAATTTCT TCAGTTTATAGTAGTCCGAGATCTATAAAGCCGTTCTTCGCGAACAGGAGCTTTAGCAAGAAGAAAGTAAAGAAAGATTCTCAGTTTGCTTCCAATAGCT CAGATCCTTCTGATATGGATCCTTGTACTAGTACTGAGTCCAGTTGCCGCACTTTGGACACTGGTTCTAGTAAACCGGTATGTACCGGATCCATTTCTAA ACTGACAAAGATCGATGAAACATCCGGATCAAAAGAAAAGGGAGAATTTTCCCAGAGCTCAAAGAGCAGCATTGGTGAATACAGCAGTAGTAGCACAAGT ATGAGTGAAGATAGCAGCATTGGCTCGAGTCGTGGTGGGCAAAACCGGCCTCATATGTCGAAAGACTCGAGGTGGGAAGCGATTCGCCAGATTCAGAGGC AGCACGGAAGCTTAGGTTTGAGGCACTTTAAGCTAGTGAAGAAGCTTGGCGGAGGGGATATCGGATCGGTTTATCTGGCGAAGCTGTACGGTACCGATTG CCAGTTTGCTCTTAAAGTGATGGATAATGAGTTCTTGGCGAGTAGGAAGAAGATGGTTAGGGCACAGACTGAAAGAGAGATTCTGCAGATGTTGGACCAT CCATTTCTACCGACACTTTACGCTCATTTCGTATCGGAGAAGTCGTCGTGCTTGGTTATGGAGTACTGCCCTGGTGGAGATCTCCATGTTCTTAGGCAGA AGCAACCAGGCAGATGTTTCTCCGAACCGGCAACAAGATTCTATGTTGCTGAAGTTCTTCTTGCACTAGAGTACCTCCACATGCTTGGAGTTGTATACAG AGATCTTAAACCGGAGAATGTTCTCGTCCGGGAAGACGGTCACATAATGCTCTCGGATTTCGATCTCTCGCTTCGGTGCTCCGTCAATCCAGTTCTGCTC CAATCGTCGTCTCCAGATACCGGCCCCCCCCAAAAGACATCCTCGTCCGAATCAAGCTGCATCGACCCTTTCTGTCTCCACCCGTCCTGGCAAGTCTCGT GCTTCACACCTCGGCTTCTCTCCATCGCTGCAAAGTCATCGAAAAAATGTGACCTCAGCGCTCAGGTCAGCCCGCTGCCGCAACTGGTAGTGGAGCCAAC GGCAGCTCGTTCCAACTCGTTCGTCGGGACGCACGAATACCTTGCTCCGGAGATTATCAAGTCCGACGGTCATGGCAGTGCAGTTGACTGGTGGACTTTC GGCATCTTTCTTTTTGAGCTTTTGTACGGTGCGACACCGTTTAAAGGTTTGGGGAACGACGAGACGCTAGCCAATGTCGTGTCGAGGAGCCTCAAGTTCC CGAGCAGCCATATGGTTAGCTTCCATGCTCGAGACTTGATTAGGGGACTGTTGATCAAGGAGCCCGAGCATCGGCTGGGGTCTTCGAAAGGTGCCGCCGA GATCAAGCAGCATCCTTTCTTCAACGGGCTCAACTGGGCTCTCGTACGTTGCATGGTTCCTCCGGATACCTCTCGGGCTAGCTTGCCGGGTTCGTTGTTT CGTGACAAGGGTGCAGGAGAGAAGGATGAGTTCGATATGTTCTAG
AA sequence Show only first row Show all	>Lus10020571 pacid=23172284 polypeptide=Lus10020571 locus=Lus10020571.g ID=Lus10020571.BGIv1.0 annot-version=v1.0 MDGFRSTSEIVESTEEEVDINGRKGGNKYSIEDDINRLFESIEIRAKKGHEGGGRDALLKKAMKRPMRSGSSPQASGIGISEHVSLKQALRGLCISQASE IAATKRLSKLPGSSSSRNSEAGPIKRLYSTTVVVEADGPSGNGNLVEISLVPEAESSSSSTENVLESGELADRSDHSSQCFDTKVLDSVQGSSHSVAEIS SVYSSPRSIKPFFANRSFSKKKVKKDSQFASNSSDPSDMDPCTSTESSCRTLDTGSSKPVCTGSISKLTKIDETSGSKEKGEFSQSSKSSIGEYSSSSTS MSEDSSIGSSRGGQNRPHMSKDSRWEAIRQIQRQHGSLGLRHFKLVKKLGGGDIGSVYLAKLYGTDCQFALKVMDNEFLASRKKMVRAQTEREILQMLDH PFLPTLYAHFVSEKSSCLVMEYCPGGDLHVLRQKQPGRCFSEPATRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLSDFDLSLRCSVNPVLL QSSSPDTGPPQKTSSSESSCIDPFCLHPSWQVSCFTPRLLSIAAKSSKKCDLSAQVSPLPQLVVEPTAARSNSFVGTHEYLAPEIIKSDGHGSAVDWWTF GIFLFELLYGATPFKGLGNDETLANVVSRSLKFPSSHMVSFHARDLIRGLLIKEPEHRLGSSKGAAEIKQHPFFNGLNWALVRCMVPPDTSRASLPGSLF RDKGAGEKDEFDMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36350			Protein kinase superfamily pro...		Lus10020571 [exp]	0	1
AT2G40070			unknown protein		Lus10011374 [exp]	1.7	0.8833
AT1G13940			Plant protein of unknown funct...		Lus10034722 [exp]	2.6	0.8496
AT1G61690			phosphoinositide binding (.1)		Lus10007623 [exp]	2.8	0.8491
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Lus10009213 [exp]	6.2	0.8311
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009460 [exp]	6.5	0.8793
AT5G59020			Protein of unknown function (D...		Lus10040721 [exp]	6.9	0.8630
AT4G34100			RING/U-box superfamily protein...		Lus10014076 [exp]	7.4	0.8530
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10006273 [exp]	9.9	0.8766
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10038995 [exp]	11.2	0.7708
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10003017 [exp]	12.5	0.8234

Compare expression of checked genes

Lus10020571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.