Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44610 554 / 0 Protein kinase superfamily protein (.1) AT3G12690 394 / 2e-132 AGC1.5 AGC kinase 1.5 (.1.2.3) AT5G47750 393 / 9e-132 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 389 / 2e-131 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 381 / 2e-128 D6PK D6 protein kinase (.1) AT1G79250 382 / 6e-128 AGC1.7 AGC kinase 1.7 (.1.2) AT5G40030 371 / 2e-124 Protein kinase superfamily protein (.1) AT1G16440 370 / 6e-124 RSH3 root hair specific 3 (.1) AT2G44830 377 / 1e-123 Protein kinase superfamily protein (.1) AT5G03640 380 / 5e-123 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006272 [exp] 811 / 0 AT3G44610 591 / 0.0 Protein kinase superfamily protein (.1) Lus10043435 [exp] 471 / 2e-164 AT3G44610 466 / 2e-162 Protein kinase superfamily protein (.1) Lus10016629 [exp] 392 / 4e-131 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 388 / 6e-130 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 386 / 3e-129 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10042911 [exp] 384 / 3e-129 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10033029 [exp] 371 / 4e-124 AT2G26700 572 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10014501 [exp] 371 / 6e-124 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10032185 [exp] 371 / 8e-124 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G186200 [exp] 583 / 0 AT3G44610 548 / 0.0 Protein kinase superfamily protein (.1) Potri.009G146500 [exp] 572 / 0 AT3G44610 548 / 0.0 Protein kinase superfamily protein (.1) Potri.008G024000 [exp] 523 / 0 AT3G44610 487 / 1e-170 Protein kinase superfamily protein (.1) Potri.010G236200 [exp] 521 / 0 AT3G44610 497 / 2e-174 Protein kinase superfamily protein (.1) Potri.016G004900 [exp] 395 / 4e-132 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 394 / 5e-132 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 396 / 3e-131 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 389 / 1e-128 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.006G114900 [exp] 392 / 4e-127 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.017G075400 [exp] 376 / 2e-126 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10020572 pacid=23172329 polypeptide=Lus10020572 locus=Lus10020572.g ID=Lus10020572.BGIv1.0 annot-version=v1.0 ATGGAGCCCCCGCCGTGGATCGACGACTTAGCCGATGACGTTCAGAGCGTGAGCTTCACTTCAACAGGAACCGCCACCACCCTCCACCGCAGCACGAGCT CCGGCTCCTCGTCTTCCGCCACTCTAACCGCCGCCCCCTCCTCAGCGGACACATCCTTCTCCACCAAATCCGCATCCAAACATCCCCTCACCTTCTCGGA TCTGAGATTCTCTCTCCGCCTCGGCTCCGGCGACATCGGCTCCGTCTACCTGGCCGAACTCAAGAGATCGAAGTCCACCTCCGAACACTCCAGCGCCGAA ATCGCGATCTTCGCCGCCAAGGTTATGGACAAGAAGGAGCTCGTTAGCAGGAACAAGGAAGGCAGGGCGAGGACCGAGAAGGAAATTCTCGAAATGCTCG ACCATCCGTTCCTACCCGCGCTCTACGCTTGCATCGAATCGCCGAGGTGGCTGTGTTTATTAACCGAGTTCTGCCCCGGCGGCGACCTCCACGTGCTCCG CCAGCGCCAGCCGCTCAAACGATTCGAGGAATCTGCCGTCAGGTTTTACGCATCACAAGTAGTAGTGGCATTAGAGTATCTCCACATGTTAGGAATCGTC TACCGTGACCTCAAGCCGGAGAACGTCCTCGTCCGCTCCGACGGCCACATTATGCTCACCGACTTCGACCTCTCCTTAAAATGCGACGCCTCCGCTTCTA CTCCCCAAGTAATCCTCTCCACCACCCAAAACCCACCTCCCTCCGGCGCTGGCGGCGCTGCCTTCAGCACCGCGGCGGATCAAAACAACAACCGCTTCAC CTCATCCTCATGCATCCTCCCAAGCTGCATAGTCCCATCAGTCTCATGCTTCCACCCAAACTTCAAACGCAAGAAGAACAAATCCTCCTCCAACCGCCGC TACTCCAACGCCCCCGAATTCGTGGCCGAGCCGGTCGACGTCCGGTCGATGTCGTTCGTCGGCACCCACGAGTACCTCGCCCCCGAAATCGTATCCGGTG AGGGCCACGGCGGGGCGGTGGATTGGTGGACTTTGGGGATATTTATGTACGAGATGTTCTACGGCGTCACTCCTTTCAAAGGGGTTGACCATGAGTTGAC TCTGGCTAACATTGTAGCTAGAGCTCTGGAGTTCCCTCCGAAAGATGGGGCCGCCGTTCCGGCGGCAGCTAAGGACTTGATGTCGCAGCTGCTGGTTAAG GATCCGGCGAGGAGGTTGGGGTCGACGATGGGTGCTTCGGCGATTAAGCATCATGAGTTTTTCAAAGGGGTGAATTGGGCTTTGTTGAGGTGTGCGAAGC CGCCGTATGTTCCGGCGCCGTTTAGTAGGGATGTTGTTTCGTCGGACGATAGTTGTCCTCAGACTCCGGTTGAATATTATTGA
AA sequence Show only first row Show all	>Lus10020572 pacid=23172329 polypeptide=Lus10020572 locus=Lus10020572.g ID=Lus10020572.BGIv1.0 annot-version=v1.0 MEPPPWIDDLADDVQSVSFTSTGTATTLHRSTSSGSSSSATLTAAPSSADTSFSTKSASKHPLTFSDLRFSLRLGSGDIGSVYLAELKRSKSTSEHSSAE IAIFAAKVMDKKELVSRNKEGRARTEKEILEMLDHPFLPALYACIESPRWLCLLTEFCPGGDLHVLRQRQPLKRFEESAVRFYASQVVVALEYLHMLGIV YRDLKPENVLVRSDGHIMLTDFDLSLKCDASASTPQVILSTTQNPPPSGAGGAAFSTAADQNNNRFTSSSCILPSCIVPSVSCFHPNFKRKKNKSSSNRR YSNAPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGGAVDWWTLGIFMYEMFYGVTPFKGVDHELTLANIVARALEFPPKDGAAVPAAAKDLMSQLLVK DPARRLGSTMGASAIKHHEFFKGVNWALLRCAKPPYVPAPFSRDVVSSDDSCPQTPVEYY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44610			Protein kinase superfamily pro...		Lus10020572 [exp]	0	1
AT1G63850			BTB/POZ domain-containing prot...		Lus10017511 [exp]	2.0	0.8935
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042246 [exp]	4.9	0.8963
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10040821 [exp]	8.5	0.8655
AT1G01910			P-loop containing nucleoside t...		Lus10041377 [exp]	9.4	0.8754
AT5G60190			Cysteine proteinases superfami...		Lus10036134 [exp]	14.3	0.7711
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10001713 [exp]	17.3	0.8743
AT1G51160			SNARE-like superfamily protein...		Lus10027541 [exp]	17.3	0.8680
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10016554 [exp]	17.7	0.8577
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10030794 [exp]	20.3	0.8799
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10020619 [exp]	21.2	0.8559

Compare expression of checked genes

Lus10020572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.